RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 DDX54Q8TDD1 881 aaKnown RBP8.88□□□□□ -0.99
USP40-202ENST00000409945 DCAF11Q8TEB1 546 aa8.88□□□□□ -0.99
USP40-202ENST00000409945 MYOM2P54296 1465 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 PTPRUQ92729 1446 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 IFT172Q9UG01 1749 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 PRAMEF27A3QJZ7 478 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 SSBP05455 408 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP40-202ENST00000409945 COL8A1P27658 744 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 DUOXA2Q1HG44 320 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 KIF4BQ2VIQ3 1234 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 PPM1JQ5JR12 505 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 HNRNPLLQ8WVV9 542 aaKnown RBP8.87□□□□□ -0.99
USP40-202ENST00000409945 KRT82Q9NSB4 513 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 PIK3C2GO75747 1445 aa8.87□□□□□ -0.99
USP40-202ENST00000409945 BPNT1O95861 308 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 RING1Q06587 406 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 SRRTQ9BXP5 876 aaKnown RBP8.86□□□□□ -0.99
USP40-202ENST00000409945 TMPRSS13Q9BYE2 586 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 TNKS2Q9H2K2 1166 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 STK26Q9P289 416 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 ZNRF3Q9ULT6 936 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 HIF3AQ9Y2N7 669 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 ADGRL3Q9HAR2 1447 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 DISP3Q9P2K9 1392 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 WIPF1O43516 503 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 CCDC144BQ3MJ40 725 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 AKAP4Q5JQC9 854 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 ACAD11Q709F0 780 aa8.86□□□□□ -0.99
USP40-202ENST00000409945 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.85□□□□□ -0.99
USP40-202ENST00000409945 LRPPRCP42704 1394 aaKnown RBP8.85□□□□□ -0.99
USP40-202ENST00000409945 HTR3BO95264 441 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 GIMAP6Q6P9H5 292 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 CYFIP1Q7L576 1253 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 DTWD1Q8N5C7 304 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 CELF2-AS1Q8N7Q2 184 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 C14orf93Q9H972 538 aaKnown RBP8.85□□□□□ -0.99
USP40-202ENST00000409945 ROBO1Q9Y6N7 1651 aa8.85□□□□□ -0.99
USP40-202ENST00000409945 ROBO2Q9HCK4 1378 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 GNB5O14775 395 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 TMPRSS2O15393 492 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 LSRQ86X29 649 aaPredicted RBP8.84□□□□□ -0.99
USP40-202ENST00000409945 MICAL1Q8TDZ2 1067 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 FERD3LQ96RJ6 166 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 PCGF6Q9BYE7 350 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 PRAG1Q86YV5 1406 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 ABCC11Q96J66 1382 aa8.84□□□□□ -0.99
USP40-202ENST00000409945 SMAD7O15105 426 aaKnown RBP8.84□□□□□ -1
USP40-202ENST00000409945 KLF4O43474 513 aa8.84□□□□□ -1
USP40-202ENST00000409945 STK10O94804 968 aaKnown RBP8.84□□□□□ -1
USP40-202ENST00000409945 ANKS3Q6ZW76 656 aa8.84□□□□□ -1
USP40-202ENST00000409945 EHMT1Q9H9B1 1298 aa8.84□□□□□ -1
USP40-202ENST00000409945 FBRSQ9HAH7 460 aa8.84□□□□□ -1
USP40-202ENST00000409945 POGKQ9P215 609 aa8.84□□□□□ -1
USP40-202ENST00000409945 SETD1AO15047 1707 aaKnown RBP8.83□□□□□ -1
USP40-202ENST00000409945 YTHDC2Q9H6S0 1430 aaKnown RBP8.83□□□□□ -1
USP40-202ENST00000409945 NEFMP07197 916 aa8.83□□□□□ -1
USP40-202ENST00000409945 GIPRP48546 466 aa8.83□□□□□ -1
USP40-202ENST00000409945 NKG7Q16617 165 aa8.83□□□□□ -1
USP40-202ENST00000409945 TMEM132EQ6IEE7 984 aa8.83□□□□□ -1
USP40-202ENST00000409945 MAP4K3Q8IVH8 894 aa8.83□□□□□ -1
USP40-202ENST00000409945 CPLX3Q8WVH0 158 aa8.83□□□□□ -1
USP40-202ENST00000409945 SPATA32Q96LK8 384 aa8.83□□□□□ -1
USP40-202ENST00000409945 DISC1Q9NRI5 854 aa8.83□□□□□ -1
USP40-202ENST00000409945 REV1Q9UBZ9 1251 aa8.83□□□□□ -1
USP40-202ENST00000409945 ADAMTS8Q9UP79 889 aa8.83□□□□□ -1
USP40-202ENST00000409945 NRXN1Q9ULB1 1477 aa8.83□□□□□ -1
USP40-202ENST00000409945 GRK4P32298 578 aa8.82□□□□□ -1
USP40-202ENST00000409945 ZYXQ15942 572 aaKnown RBP8.82□□□□□ -1
USP40-202ENST00000409945 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.82□□□□□ -1
USP40-202ENST00000409945 REXO1Q8N1G1 1221 aaKnown RBP8.82□□□□□ -1
USP40-202ENST00000409945 RUSC1Q9BVN2 902 aa8.82□□□□□ -1
USP40-202ENST00000409945 ENAMQ9NRM1 1142 aa8.82□□□□□ -1
USP40-202ENST00000409945 PRR36Q9H6K5 1346 aa8.82□□□□□ -1
USP40-202ENST00000409945 TECPR2O15040 1411 aa8.82□□□□□ -1
USP40-202ENST00000409945 FAM86C2PA6NEL3 165 aa8.82□□□□□ -1
USP40-202ENST00000409945 UPK3BL1B0FP48 263 aa8.82□□□□□ -1
USP40-202ENST00000409945 UPK3BL2E5RIL1 263 aa8.82□□□□□ -1
USP40-202ENST00000409945 ACRP10323 421 aa8.82□□□□□ -1
USP40-202ENST00000409945 ZNF165P49910 485 aa8.82□□□□□ -1
USP40-202ENST00000409945 EXOSC6Q5RKV6 272 aaKnown RBP8.82□□□□□ -1
USP40-202ENST00000409945 ELMO3Q96BJ8 720 aa8.82□□□□□ -1
USP40-202ENST00000409945 ARMC5Q96C12 935 aa8.82□□□□□ -1
USP40-202ENST00000409945 DPH2Q9BQC3 489 aaPredicted RBP8.82□□□□□ -1
USP40-202ENST00000409945 CRIM1Q9NZV1 1036 aa8.82□□□□□ -1
USP40-202ENST00000409945 PHLPP1O60346 1717 aa8.81□□□□□ -1
USP40-202ENST00000409945 KNDC1Q76NI1 1749 aa8.81□□□□□ -1
USP40-202ENST00000409945 ADH5P11766 374 aa8.81□□□□□ -1
USP40-202ENST00000409945 HCLS1P14317 486 aaPredicted RBP8.81□□□□□ -1
USP40-202ENST00000409945 ELNP15502 786 aa8.81□□□□□ -1
USP40-202ENST00000409945 RAC1P63000 192 aa8.81□□□□□ -1
USP40-202ENST00000409945 SERINC3Q13530 473 aa8.81□□□□□ -1
USP40-202ENST00000409945 COL9A2Q14055 689 aaPredicted RBP8.81□□□□□ -1
USP40-202ENST00000409945 ACSF2Q96CM8 615 aaPredicted RBP8.81□□□□□ -1
USP40-202ENST00000409945 FANCD2OSQ96PS1 177 aa8.81□□□□□ -1
USP40-202ENST00000409945 FAM105AQ9NUU6 356 aa8.81□□□□□ -1
USP40-202ENST00000409945 MKL2Q9ULH7 1088 aa8.81□□□□□ -1
USP40-202ENST00000409945 AP4E1Q9UPM8 1137 aa8.81□□□□□ -1
USP40-202ENST00000409945 JCADQ9P266 1359 aa8.81□□□□□ -1
USP40-202ENST00000409945 ATE1O95260 518 aa8.8□□□□□ -1
USP40-202ENST00000409945 POLR2BP30876 1174 aaKnown RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms