RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PHF20L1A8MW92 1017 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 CYP2C8P10632 490 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 CYP7A1P22680 504 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 INHBEP58166 350 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 DYNLL1P63167 89 aaKnown RBP11.03□□□□□ -0.64
VPS53-203ENST00000401468 PPIL2Q13356 520 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 SNAPC2Q13487 334 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 RRP1BQ14684 758 aaKnown RBP11.03□□□□□ -0.64
VPS53-203ENST00000401468 SH3TC2Q8TF17 1288 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 RILPL2Q969X0 211 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 PUS7LQ9H0K6 701 aaKnown RBP11.03□□□□□ -0.64
VPS53-203ENST00000401468 EFCC1Q9HA90 598 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 TSR3Q9UJK0 312 aaKnown RBP11.03□□□□□ -0.64
VPS53-203ENST00000401468 CEP290O15078 2479 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 RAD50Q92878 1312 aa11.03□□□□□ -0.64
VPS53-203ENST00000401468 A0A0D9SFI3 127 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 TRIM75PA6NK02 468 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 PDHXO00330 501 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 PEX10O60683 326 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 CETPP11597 493 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 MOGSQ13724 837 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 SLFNL1Q499Z3 407 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 MAPKAPK5Q8IW41 473 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 TEX11Q8IYF3 940 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 MIGA1Q8NAN2 632 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 ERO1AQ96HE7 468 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 FAM227BQ96M60 508 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 STRBPQ96SI9 672 aaKnown RBP11.02□□□□□ -0.65
VPS53-203ENST00000401468 CFHR5Q9BXR6 569 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 IDI2Q9BXS1 227 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 ZFYVE28Q9HCC9 887 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 PTPN22Q9Y2R2 807 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 ZHX2Q9Y6X8 837 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 PARP14Q460N5 1801 aa11.02□□□□□ -0.65
VPS53-203ENST00000401468 MYH4Q9Y623 1939 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 FRMPD3Q5JV73 1810 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 MAGEB6P1A0A0J9YX57 407 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 M0R2C6 588 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 BAG3O95817 575 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 EN2P19622 333 aaPredicted RBP11.01□□□□□ -0.65
VPS53-203ENST00000401468 JAG1P78504 1218 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 NMIQ13287 307 aaPredicted RBP11.01□□□□□ -0.65
VPS53-203ENST00000401468 MCMDC2Q4G0Z9 681 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 IL25Q9H293 177 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 ZNF112Q9UJU3 913 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 PNMA3Q9UL41 463 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 ZMYM6O95789 1325 aa11.01□□□□□ -0.65
VPS53-203ENST00000401468 COL6A3P12111 3177 aa11□□□□□ -0.65
VPS53-203ENST00000401468 GREB1LQ9C091 1923 aaPredicted RBP11□□□□□ -0.65
VPS53-203ENST00000401468 UNCXA6NJT0 531 aa11□□□□□ -0.65
VPS53-203ENST00000401468 FOXP2O15409 715 aa11□□□□□ -0.65
VPS53-203ENST00000401468 SGSM2O43147 1006 aa11□□□□□ -0.65
VPS53-203ENST00000401468 ENTPD3O75355 529 aa11□□□□□ -0.65
VPS53-203ENST00000401468 CDC45O75419 566 aa11□□□□□ -0.65
VPS53-203ENST00000401468 GDF11O95390 407 aa11□□□□□ -0.65
VPS53-203ENST00000401468 PTPRAP18433 802 aa11□□□□□ -0.65
VPS53-203ENST00000401468 PPATQ06203 517 aa11□□□□□ -0.65
VPS53-203ENST00000401468 PKN2Q16513 984 aaKnown RBP11□□□□□ -0.65
VPS53-203ENST00000401468 GPAT2Q6NUI2 795 aa11□□□□□ -0.65
VPS53-203ENST00000401468 SCYL3Q8IZE3 742 aa11□□□□□ -0.65
VPS53-203ENST00000401468 LCORLQ8N3X6 602 aa11□□□□□ -0.65
VPS53-203ENST00000401468 TGFBRAP1Q8WUH2 860 aa11□□□□□ -0.65
VPS53-203ENST00000401468 TATDN2Q93075 761 aa11□□□□□ -0.65
VPS53-203ENST00000401468 SEC62Q99442 399 aaKnown RBP11□□□□□ -0.65
VPS53-203ENST00000401468 OSBPL5Q9H0X9 879 aaPredicted RBP11□□□□□ -0.65
VPS53-203ENST00000401468 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11□□□□□ -0.65
VPS53-203ENST00000401468 GPAA1O43292 621 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 TLR2O60603 784 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 MBD4O95243 580 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 GNAT2P19087 354 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 NOM1Q5C9Z4 860 aaKnown RBP10.99□□□□□ -0.65
VPS53-203ENST00000401468 TREML2Q5T2D2 321 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 GIMAP6Q6P9H5 292 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 ZNF589Q86UQ0 364 aaPredicted RBP10.99□□□□□ -0.65
VPS53-203ENST00000401468 KCNV2Q8TDN2 545 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 HOOK2Q96ED9 719 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 TRIM47Q96LD4 638 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 PICK1Q9NRD5 415 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 DIAPH3Q9NSV4 1193 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 PALD1Q9ULE6 856 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 CCDC171Q6TFL3 1326 aa10.99□□□□□ -0.65
VPS53-203ENST00000401468 GSG1L2A8MUP6 293 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 EPB41L2O43491 1005 aaKnown RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 PSMC4P43686 418 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 MFAP1P55081 439 aaKnown RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 LACTBP83111 547 aaPredicted RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 ALX1Q15699 326 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 SLC9C1Q4G0N8 1177 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 NOL9Q5SY16 702 aaKnown RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 CWC27Q6UX04 472 aaKnown RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 RUFY2Q8WXA3 655 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 NOL10Q9BSC4 688 aaKnown RBP10.98□□□□□ -0.65
VPS53-203ENST00000401468 ESYT1Q9BSJ8 1104 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 ARMT1Q9H993 441 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 ATP8A2Q9NTI2 1148 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 GABRQQ9UN88 632 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 KCNH4Q9UQ05 1017 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 AFG3L2Q9Y4W6 797 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 FLT1P17948 1338 aa10.98□□□□□ -0.65
VPS53-203ENST00000401468 ADGRA2Q96PE1 1338 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms