RNA–Protein interactions for RNA: ENST00000399079.7

HLA-DQB1-202, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,501 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-202ENST00000399079 VCPKMTQ9H867 229 aa16.75■□□□□ 0.27
HLA-DQB1-202ENST00000399079 RBPJLQ9UBG7 517 aa16.75■□□□□ 0.27
HLA-DQB1-202ENST00000399079 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.75■□□□□ 0.27
HLA-DQB1-202ENST00000399079 IGKV6D-41A0A0C4DH26 115 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 RAD21O60216 631 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TSPY3P0CV98 308 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TSPY8P0CW00 308 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 CHMLP26374 656 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TFAP4Q01664 338 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 CEP95Q96GE4 821 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 PAGR1Q9BTK6 254 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 SH2D4AQ9H788 454 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 SRRDQ9UH36 339 aa16.74■□□□□ 0.27
HLA-DQB1-202ENST00000399079 GREB1LQ9C091 1923 aaPredicted RBP16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 ZMYM6O95789 1325 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 GNRH1P01148 92 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 FCGRTP55899 365 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 Q3C1V9 767 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 NEDD1Q8NHV4 660 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TANGO6Q9C0B7 1094 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 NBPF3Q9H094 633 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 MTMR4Q9NYA4 1195 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 MORF4L1Q9UBU8 362 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 CLIP2Q9UDT6 1046 aa16.73■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TNPO2O14787 897 aaKnown RBP16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 CENPBP07199 599 aaPredicted RBP16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 PRKCZQ05513 592 aa16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 LPAR1Q92633 364 aa16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TOMM22Q9NS69 142 aa16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 GABRQQ9UN88 632 aa16.72■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TSPY2A6NKD2 308 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 SPDYE16A6NNV3 312 aaPredicted RBP16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 RANBP6O60518 1105 aaKnown RBP16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 NMT2O60551 498 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 FGRP09769 529 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 RRP12Q5JTH9 1297 aaKnown RBP16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 TBC1D10CQ8IV04 446 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 GPRC5AQ8NFJ5 357 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 GOPCQ9HD26 462 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 MYPNQ86TC9 1320 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 PLIN4Q96Q06 1357 aa16.71■□□□□ 0.27
HLA-DQB1-202ENST00000399079 ORC4O43929 436 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 CNMDO75829 334 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 TTLL1O95922 423 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 HOXD10P28358 340 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ERVK-9P63128 1117 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ERVK-24P63145 666 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 COG2Q14746 738 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 NKX2-3Q8TAU0 364 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 NUP88Q99567 741 aaPredicted RBP16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 DSCC1Q9BVC3 393 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 PORCNQ9H237 461 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 IL17RBQ9NRM6 502 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 F5H6K3 240 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 WDR46O15213 610 aaKnown RBP16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 FLOT1O75955 427 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 FLT3LGP49771 235 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 KLRC3Q07444 240 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 SLC9C1Q4G0N8 1177 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 FAM83BQ5T0W9 1011 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 LBX2Q6XYB7 198 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 LRRC47Q8N1G4 583 aaKnown RBP16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 SH3TC2Q8TF17 1288 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 FBXO28Q9NVF7 368 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 BTBD7Q9P203 1132 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 RABGAP1Q9Y3P9 1069 aa16.7■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MGAMO43451 1857 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ZNF213O14771 459 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 PRMT2P55345 433 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 SOX10P56693 466 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 AKNAD1Q5T1N1 836 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MFSD6Q6ZSS7 791 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 RAET1EQ8TD07 263 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 GTF3C2Q8WUA4 911 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MKL1Q969V6 931 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 COA7Q96BR5 231 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 HOXC10Q9NYD6 342 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 STX8Q9UNK0 236 aa16.69■□□□□ 0.26
HLA-DQB1-202ENST00000399079 NDUFB10O96000 172 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MYCP01106 439 aaPredicted RBP16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 DSG3P32926 999 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 PTH1RQ03431 593 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 STAG1Q8WVM7 1258 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 RUFY2Q8WXA3 655 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 CHMP4CQ96CF2 233 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ATG4CQ96DT6 458 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MKI67P46013 3256 aaKnown RBP16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 NEDD4P46934 1319 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 RAD50Q92878 1312 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 DOCK3Q8IZD9 2030 aa16.68■□□□□ 0.26
HLA-DQB1-202ENST00000399079 SGSM2O43147 1006 aa16.67■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ARMC5Q96C12 935 aa16.67■□□□□ 0.26
HLA-DQB1-202ENST00000399079 GJD2Q9UKL4 321 aa16.67■□□□□ 0.26
HLA-DQB1-202ENST00000399079 RLFQ13129 1914 aa16.67■□□□□ 0.26
HLA-DQB1-202ENST00000399079 IMMTQ16891 758 aaKnown RBP16.66■□□□□ 0.26
HLA-DQB1-202ENST00000399079 CCAR1Q8IX12 1150 aaKnown RBP16.66■□□□□ 0.26
HLA-DQB1-202ENST00000399079 ZNF333Q96JL9 665 aa16.66■□□□□ 0.26
HLA-DQB1-202ENST00000399079 MYH4Q9Y623 1939 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms