RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 GDF15Q99988 308 aa12.48□□□□□ -0.41
NEDD8-202ENST00000396828 ARMT1Q9H993 441 aa12.48□□□□□ -0.41
NEDD8-202ENST00000396828 DCP1AQ9NPI6 582 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-202ENST00000396828 MCM9Q9NXL9 1143 aa12.48□□□□□ -0.41
NEDD8-202ENST00000396828 BAZ2AQ9UIF9 1905 aaKnown RBP12.47□□□□□ -0.41
NEDD8-202ENST00000396828 FRMPD3Q5JV73 1810 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CYP2D7A0A087X1C5 515 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 COL6A1P12109 1028 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CAPN2P17655 700 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 PTPREP23469 700 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 RGS2P41220 211 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 MAP2K5Q13163 448 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 WDR78Q5VTH9 848 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CERS3Q8IU89 383 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CCAR1Q8IX12 1150 aaKnown RBP12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CLASRPQ8N2M8 674 aaKnown RBP12.47□□□□□ -0.41
NEDD8-202ENST00000396828 NPLOC4Q8TAT6 608 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.47□□□□□ -0.41
NEDD8-202ENST00000396828 KIF1BPQ96EK5 621 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 BOLA2Q9H3K6 86 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 CABP5Q9NP86 173 aa12.47□□□□□ -0.41
NEDD8-202ENST00000396828 MPHOSPH10O00566 681 aaKnown RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 IFIT2P09913 472 aaKnown RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 AKR1B1P15121 316 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 USP14P54578 494 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 TTF1Q15361 905 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 LRRC26Q2I0M4 334 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 HSP90AB4PQ58FF6 505 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 LBX2Q6XYB7 198 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 TRPV1Q8NER1 839 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 GTF3C2Q8WUA4 911 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 APBA2Q99767 749 aa12.46□□□□□ -0.41
NEDD8-202ENST00000396828 CRNKL1Q9BZJ0 848 aaKnown RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-202ENST00000396828 SMARCA5O60264 1052 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-202ENST00000396828 MBD4O95243 580 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 IGHA2P01877 340 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 CYP2C19P33261 490 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 ADD2P35612 726 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 MAGEA10P43363 369 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-202ENST00000396828 GRB14Q14449 540 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 TMED8Q6PL24 325 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-202ENST00000396828 SMC5Q8IY18 1101 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 DCTPP1Q9H773 170 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 PAG1Q9NWQ8 432 aa12.45□□□□□ -0.42
NEDD8-202ENST00000396828 CDH23Q9H251 3354 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 A0A1W2PPC1 479 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 SLC15A5A6NIM6 579 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 BMP8BP34820 402 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 TRMT44Q8IYL2 757 aaKnown RBP12.44□□□□□ -0.42
NEDD8-202ENST00000396828 SPICE1Q8N0Z3 855 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 MOV10L1Q9BXT6 1211 aaKnown RBP12.44□□□□□ -0.42
NEDD8-202ENST00000396828 CWC22Q9HCG8 908 aaKnown RBP12.44□□□□□ -0.42
NEDD8-202ENST00000396828 FOXD4L1Q9NU39 408 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 A0A0G2JMZ2 1700 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 MYH8P13535 1937 aa12.44□□□□□ -0.42
NEDD8-202ENST00000396828 HOXC6P09630 235 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 ATP5JP18859 108 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 CCNA1P78396 465 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 COG2Q14746 738 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 C12orf60Q5U649 245 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 HAUS7Q99871 368 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 TANGO6Q9C0B7 1094 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 SPATC1LQ9H0A9 340 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 PARP14Q460N5 1801 aa12.43□□□□□ -0.42
NEDD8-202ENST00000396828 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 USP17L21D6R901 530 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 COBLO75128 1261 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 RAB11FIP3O75154 756 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 ERCC3P19447 782 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 ADORA2AP29274 412 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 CNGA1P29973 690 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 CDK8P49336 464 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 ATP2B2Q01814 1243 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 PRAMEF19Q5SWL8 479 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 ANO1Q5XXA6 986 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 TMEM179Q6ZVK1 233 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 ATG4CQ96DT6 458 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 PUS7LQ9H0K6 701 aaKnown RBP12.42□□□□□ -0.42
NEDD8-202ENST00000396828 MYH7P12883 1935 aa12.42□□□□□ -0.42
NEDD8-202ENST00000396828 COL11A1P12107 1806 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 VCANP13611 3396 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 GLRX3O76003 335 aaKnown RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 CYBAP13498 195 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 DSG3P32926 999 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 MDM2Q00987 491 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 NUCB1Q02818 461 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 ANKRD45Q5TZF3 282 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 MFSD14CQ5VZR4 134 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 Q7L0L9 218 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 CHD1LQ86WJ1 897 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 SENP6Q9GZR1 1112 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 ATP8A2Q9NTI2 1148 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 FBXO28Q9NVF7 368 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 HOXC10Q9NYD6 342 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 SWAP70Q9UH65 585 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 DDX20Q9UHI6 824 aaKnown RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 TMX2Q9Y320 296 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 IVNS1ABPQ9Y6Y0 642 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms