RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 PRKCZQ05513 592 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 CTDSPL2Q05D32 466 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 SPICE1Q8N0Z3 855 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 LPAR1Q92633 364 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 COA7Q96BR5 231 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 PAGR1Q9BTK6 254 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 GABRQQ9UN88 632 aa28.16■■■□□ 2.1
SHMT1-204ENST00000395682 POTEEQ6S8J3 1075 aa28.15■■■□□ 2.1
SHMT1-204ENST00000395682 GSPT1P15170 499 aaKnown RBP28.14■■■□□ 2.1
SHMT1-204ENST00000395682 Q3C1V9 767 aa28.14■■■□□ 2.1
SHMT1-204ENST00000395682 TANGO6Q9C0B7 1094 aa28.14■■■□□ 2.1
SHMT1-204ENST00000395682 INCENPQ9NQS7 918 aa28.14■■■□□ 2.1
SHMT1-204ENST00000395682 ANAPC4Q9UJX5 808 aa28.14■■■□□ 2.1
SHMT1-204ENST00000395682 MGAMO43451 1857 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 FLT3LGP49771 235 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 RGS19P49795 217 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 ERVK-9P63128 1117 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 ERVK-24P63145 666 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 COG2Q14746 738 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 FAM47AQ5JRC9 791 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 SH3TC2Q8TF17 1288 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 GOPCQ9HD26 462 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 HOXC10Q9NYD6 342 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 NYAP2Q9P242 653 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 RABGAP1Q9Y3P9 1069 aa28.13■■■□□ 2.09
SHMT1-204ENST00000395682 IGKV6D-41A0A0C4DH26 115 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 TSPY3P0CV98 308 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 TSPY8P0CW00 308 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 TFAP4Q01664 338 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 NEDD1Q8NHV4 660 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 ZNF333Q96JL9 665 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 CLIP2Q9UDT6 1046 aa28.12■■■□□ 2.09
SHMT1-204ENST00000395682 SPDYE16A6NNV3 312 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-204ENST00000395682 RAD21O60216 631 aa28.11■■■□□ 2.09
SHMT1-204ENST00000395682 CNMDO75829 334 aa28.11■■■□□ 2.09
SHMT1-204ENST00000395682 LBX2Q6XYB7 198 aa28.11■■■□□ 2.09
SHMT1-204ENST00000395682 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.11■■■□□ 2.09
SHMT1-204ENST00000395682 WDR46O15213 610 aaKnown RBP28.1■■■□□ 2.09
SHMT1-204ENST00000395682 GRK4P32298 578 aa28.1■■■□□ 2.09
SHMT1-204ENST00000395682 CCAR1Q8IX12 1150 aaKnown RBP28.1■■■□□ 2.09
SHMT1-204ENST00000395682 CEP95Q96GE4 821 aa28.1■■■□□ 2.09
SHMT1-204ENST00000395682 MTMR4Q9NYA4 1195 aa28.1■■■□□ 2.09
SHMT1-204ENST00000395682 TACC3Q9Y6A5 838 aa28.1■■■□□ 2.09
SHMT1-204ENST00000395682 MYCP01106 439 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-204ENST00000395682 MKL1Q969V6 931 aa28.09■■■□□ 2.09
SHMT1-204ENST00000395682 ADCY3O60266 1144 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 FLOT1O75955 427 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 MAPK4P31152 587 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 CENPQQ7L2Z9 268 aaPredicted RBP28.08■■■□□ 2.09
SHMT1-204ENST00000395682 PORCNQ9H237 461 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 BTBD7Q9P203 1132 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 BIN2Q9UBW5 565 aaPredicted RBP28.08■■■□□ 2.09
SHMT1-204ENST00000395682 GJD2Q9UKL4 321 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 ZMYM6O95789 1325 aa28.08■■■□□ 2.09
SHMT1-204ENST00000395682 GREB1LQ9C091 1923 aaPredicted RBP28.08■■■□□ 2.09
SHMT1-204ENST00000395682 F5H6K3 240 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 TTLL1O95922 423 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 FGRP09769 529 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 DSG3P32926 999 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 HAND2P61296 217 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 CCNA1P78396 465 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 KLRC3Q07444 240 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 IRF5Q13568 498 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 SLAIN1Q8ND83 568 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 DOCK3Q8IZD9 2030 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 CENPFP49454 3210 aa28.07■■■□□ 2.08
SHMT1-204ENST00000395682 TSPY2A6NKD2 308 aa28.06■■■□□ 2.08
SHMT1-204ENST00000395682 ORC4O43929 436 aa28.06■■■□□ 2.08
SHMT1-204ENST00000395682 RANBP6O60518 1105 aaKnown RBP28.06■■■□□ 2.08
SHMT1-204ENST00000395682 SAMD1Q6SPF0 538 aaPredicted RBP28.06■■■□□ 2.08
SHMT1-204ENST00000395682 TMEM106CQ9BVX2 250 aa28.06■■■□□ 2.08
SHMT1-204ENST00000395682 TOMM22Q9NS69 142 aa28.06■■■□□ 2.08
SHMT1-204ENST00000395682 MLLT1Q03111 559 aaPredicted RBP28.05■■■□□ 2.08
SHMT1-204ENST00000395682 FAM83BQ5T0W9 1011 aa28.05■■■□□ 2.08
SHMT1-204ENST00000395682 PLIN4Q96Q06 1357 aa28.05■■■□□ 2.08
SHMT1-204ENST00000395682 POTEFA5A3E0 1075 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 NDUFB10O96000 172 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 ELNP15502 786 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 PLEKHH3Q7Z736 793 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 PXYLP1Q8TE99 480 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 ATG4CQ96DT6 458 aa28.04■■■□□ 2.08
SHMT1-204ENST00000395682 CWC22Q9HCG8 908 aaKnown RBP28.04■■■□□ 2.08
SHMT1-204ENST00000395682 CHMLP26374 656 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 RRP12Q5JTH9 1297 aaKnown RBP28.03■■■□□ 2.08
SHMT1-204ENST00000395682 GPR142Q7Z601 462 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 MB21D1Q8N884 522 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 NUP88Q99567 741 aaPredicted RBP28.03■■■□□ 2.08
SHMT1-204ENST00000395682 DSCC1Q9BVC3 393 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 IL17RBQ9NRM6 502 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 FBXO28Q9NVF7 368 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 SYNPO2Q9UMS6 1093 aa28.03■■■□□ 2.08
SHMT1-204ENST00000395682 ZNF213O14771 459 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 NMT2O60551 498 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 MTFR1Q15390 333 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 PPP4R3BQ5MIZ7 849 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 AKNAD1Q5T1N1 836 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 WDR78Q5VTH9 848 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 MFSD6Q6ZSS7 791 aa28.02■■■□□ 2.08
SHMT1-204ENST00000395682 LRRC47Q8N1G4 583 aaKnown RBP28.02■■■□□ 2.08
SHMT1-204ENST00000395682 NUDT12Q9BQG2 462 aa28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms