RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 LACTBP83111 547 aaPredicted RBP25.71■■□□□ 1.71
CLN3-207ENST00000395653 PPP4R3BQ5MIZ7 849 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 CATSPERGQ6ZRH7 1159 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 TOMM22Q9NS69 142 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 SYNPO2Q9UMS6 1093 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 TTLL1O95922 423 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 KIF22Q14807 665 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 ARHGEF6Q15052 776 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 FAM110CQ1W6H9 321 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 KIAA1755Q5JYT7 1200 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 MKL1Q969V6 931 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 P2RX7Q99572 595 aaKnown RBP25.71■■□□□ 1.71
CLN3-207ENST00000395653 ESYT1Q9BSJ8 1104 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 RPAP3Q9H6T3 665 aaPredicted RBP25.71■■□□□ 1.71
CLN3-207ENST00000395653 GOPCQ9HD26 462 aa25.71■■□□□ 1.71
CLN3-207ENST00000395653 HERVK_113P62684 666 aa25.7■■□□□ 1.7
CLN3-207ENST00000395653 PTH1RQ03431 593 aa25.7■■□□□ 1.7
CLN3-207ENST00000395653 RRP12Q5JTH9 1297 aaKnown RBP25.7■■□□□ 1.7
CLN3-207ENST00000395653 GTF3C2Q8WUA4 911 aaPredicted RBP25.7■■□□□ 1.7
CLN3-207ENST00000395653 U3KPZ7 1027 aaPredicted RBP25.7■■□□□ 1.7
CLN3-207ENST00000395653 WDR46O15213 610 aaKnown RBP25.69■■□□□ 1.7
CLN3-207ENST00000395653 CDC45O75419 566 aa25.69■■□□□ 1.7
CLN3-207ENST00000395653 PKN2Q16513 984 aaKnown RBP25.69■■□□□ 1.7
CLN3-207ENST00000395653 CASC1Q6TDU7 716 aa25.69■■□□□ 1.7
CLN3-207ENST00000395653 MCOLN1Q9GZU1 580 aa25.69■■□□□ 1.7
CLN3-207ENST00000395653 CLIP2Q9UDT6 1046 aa25.69■■□□□ 1.7
CLN3-207ENST00000395653 OTOP1Q7RTM1 612 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 SPICE1Q8N0Z3 855 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 ANKRD13CQ8N6S4 541 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 MAP4K1Q92918 833 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 EFCC1Q9HA90 598 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 IL17RBQ9NRM6 502 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 TRIM17Q9Y577 477 aa25.68■■□□□ 1.7
CLN3-207ENST00000395653 NEDD4P46934 1319 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 CAP1Q01518 475 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 KIAA1211Q6ZU35 1233 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 ESR2Q92731 530 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 TCP11L1Q9NUJ3 509 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 MORF4L1Q9UBU8 362 aa25.67■■□□□ 1.7
CLN3-207ENST00000395653 NOVP48745 357 aa25.66■■□□□ 1.7
CLN3-207ENST00000395653 LBX2Q6XYB7 198 aa25.66■■□□□ 1.7
CLN3-207ENST00000395653 TANGO6Q9C0B7 1094 aa25.66■■□□□ 1.7
CLN3-207ENST00000395653 MYH4Q9Y623 1939 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 F5H6K3 240 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 GNRH1P01148 92 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 KLRC3Q07444 240 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 GMCL1P1Q8NEA9 526 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 ARHGAP39Q9C0H5 1083 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 STX8Q9UNK0 236 aa25.65■■□□□ 1.7
CLN3-207ENST00000395653 NMT2O60551 498 aa25.64■■□□□ 1.7
CLN3-207ENST00000395653 PSMC4P43686 418 aa25.64■■□□□ 1.7
CLN3-207ENST00000395653 COG2Q14746 738 aa25.64■■□□□ 1.7
CLN3-207ENST00000395653 LRRC47Q8N1G4 583 aaKnown RBP25.64■■□□□ 1.7
CLN3-207ENST00000395653 LSG1Q9H089 658 aaKnown RBP25.64■■□□□ 1.7
CLN3-207ENST00000395653 CNNM2Q9H8M5 875 aa25.64■■□□□ 1.7
CLN3-207ENST00000395653 HOXC10Q9NYD6 342 aa25.64■■□□□ 1.7
CLN3-207ENST00000395653 SPDYE16A6NNV3 312 aaPredicted RBP25.63■■□□□ 1.69
CLN3-207ENST00000395653 RAD21O60216 631 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 NDUFB10O96000 172 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 CYP21A2P08686 494 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 CTGFP29279 349 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 FBXO46Q6PJ61 603 aaPredicted RBP25.63■■□□□ 1.69
CLN3-207ENST00000395653 KRT23Q9C075 422 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 RBPJLQ9UBG7 517 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 RBM8AQ9Y5S9 174 aaKnown RBP25.63■■□□□ 1.69
CLN3-207ENST00000395653 MYPNQ86TC9 1320 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 ZSWIM8A7E2V4 1837 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 FCGRTP55899 365 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 TRIM47Q96LD4 638 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 TXNRD2Q9NNW7 524 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 RABGAP1Q9Y3P9 1069 aa25.63■■□□□ 1.69
CLN3-207ENST00000395653 FLOT1O75955 427 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 FAM83BQ5T0W9 1011 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 POTEEQ6S8J3 1075 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 GPRC5AQ8NFJ5 357 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 NKX2-3Q8TAU0 364 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 ANO2Q9NQ90 1003 aa25.62■■□□□ 1.69
CLN3-207ENST00000395653 B4E1Z4 1266 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 KDM4AO75164 1064 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 FMNL1O95466 1100 aaPredicted RBP25.61■■□□□ 1.69
CLN3-207ENST00000395653 DSG3P32926 999 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 PRMT2P55345 433 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 ERVK-9P63128 1117 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 ERVK-24P63145 666 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 TTC14Q96N46 770 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 PAGR1Q9BTK6 254 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 PTPN22Q9Y2R2 807 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 RLFQ13129 1914 aa25.61■■□□□ 1.69
CLN3-207ENST00000395653 A0A0G2JMZ2 1700 aa25.6■■□□□ 1.69
CLN3-207ENST00000395653 HOXD10P28358 340 aa25.6■■□□□ 1.69
CLN3-207ENST00000395653 SLFN13Q68D06 897 aa25.6■■□□□ 1.69
CLN3-207ENST00000395653 IQCA1Q86XH1 822 aa25.6■■□□□ 1.69
CLN3-207ENST00000395653 PARP14Q460N5 1801 aa25.59■■□□□ 1.69
CLN3-207ENST00000395653 MGAMO43451 1857 aa25.59■■□□□ 1.69
CLN3-207ENST00000395653 CNMDO75829 334 aa25.59■■□□□ 1.69
CLN3-207ENST00000395653 ECM2O94769 699 aaPredicted RBP25.59■■□□□ 1.69
CLN3-207ENST00000395653 CCDC178Q5BJE1 867 aa25.59■■□□□ 1.69
CLN3-207ENST00000395653 MB21D1Q8N884 522 aa25.59■■□□□ 1.69
CLN3-207ENST00000395653 NUP88Q99567 741 aaPredicted RBP25.59■■□□□ 1.69
CLN3-207ENST00000395653 PEX10O60683 326 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms