RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 BCL9LQ86UU0 1499 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 ZNF804BA4D1E1 1349 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 ARAP2Q8WZ64 1704 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 CUTAO60888 179 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 ZNF654Q8IZM8 581 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 SMARCC1Q92922 1105 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 RIOK1Q9BRS2 568 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 UBAC1Q9BSL1 405 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 WNK3Q9BYP7 1800 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 LONRF3Q496Y0 759 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 SRGAP1Q7Z6B7 1085 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 NOSTRINQ8IVI9 506 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 CRACR2BQ8N4Y2 399 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 IQUBQ8NA54 791 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 FANCBQ8NB91 859 aa20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 BSDC1Q9NW68 430 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-202ENST00000389805 PHLPP1O60346 1717 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 STX10O60499 249 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 ZNF827Q17R98 1081 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 CLEC4GQ6UXB4 293 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 TUBE1Q9UJT0 475 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 HPSEQ9Y251 543 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 PCDHA5Q9Y5H7 936 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 DOCK2Q92608 1830 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 TNKSO95271 1327 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 GOLGA6L9A6NEM1 432 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 MMP1P03956 469 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 MAGEA9P43362 315 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 SF3B3Q15393 1217 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 BARGINQ6ZT62 677 aa20.06■□□□□ 0.8
SQSTM1-202ENST00000389805 PPP6R2O75170 966 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 BMP6P22004 513 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 SLC4A8Q2Y0W8 1093 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 CAVIN4Q5BKX8 364 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 AMIGO3Q86WK7 504 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 GNL3LQ9NVN8 582 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 E2F4Q16254 413 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 TRIM22Q8IYM9 498 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 SHISA4Q96DD7 197 aa20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 RNF216Q9NWF9 866 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-202ENST00000389805 VSNL1P62760 191 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 UBE4AQ14139 1066 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 METTL16Q86W50 562 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 CNNM3Q8NE01 707 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 KIF4BQ2VIQ3 1234 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 ZNF569Q5MCW4 686 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 SPECC1LQ69YQ0 1117 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 LRRC31Q6UY01 552 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 C8orf37Q96NL8 207 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 L1RE1Q9UN81 338 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 NFE2L3Q9Y4A8 694 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 PCDHB6Q9Y5E3 794 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 FAM205CA6NFA0 338 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 TBX2Q13207 712 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 SEC23AQ15436 765 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 HSP90B2PQ58FF3 399 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 RESP18Q5W5W9 173 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 CTR9Q6PD62 1173 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 ENAHQ8N8S7 591 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 GPATCH11Q8N954 259 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 JMYQ8N9B5 988 aa20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 RNF41Q9H4P4 317 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-202ENST00000389805 CHD4Q14839 1912 aa20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 EIF3JO75822 258 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 KCNH3Q9ULD8 1083 aa20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 STK36Q9NRP7 1315 aa20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 FMR1Q06787 632 aaKnown RBP eCLIP20.03■□□□□ 0.85e-7■■□□□ 13
SQSTM1-202ENST00000389805 CASP8Q14790 479 aa20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-202ENST00000389805 USP17L12C9JPN9 530 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 USP17L21D6R901 530 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 NMT2O60551 498 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 SAFBQ15424 915 aaKnown RBP eCLIP20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 TXNRD3Q86VQ6 643 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 ESR2Q92731 530 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 NRAPQ86VF7 1730 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 CCDC175P0C221 793 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 RPS8P62241 208 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 FAM204AQ9H8W3 233 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 CABP5Q9NP86 173 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 SAMSN1Q9NSI8 373 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 AATFQ9NY61 560 aaKnown RBP eCLIP20.02■□□□□ 0.81e-6■□□□□ 10.1
SQSTM1-202ENST00000389805 VPS54Q9P1Q0 977 aa20.02■□□□□ 0.8
SQSTM1-202ENST00000389805 BAZ2BQ9UIF8 2168 aaKnown RBP20.02■□□□□ 0.79
SQSTM1-202ENST00000389805 ERLIN1O75477 346 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 ABL1P00519 1130 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 RAD9BQ6WBX8 426 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 USP49Q70CQ1 688 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 CDC23Q9UJX2 597 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 ECM29Q5VYK3 1845 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 PLEKHA8P1O95397 391 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 DEXIO95424 95 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 PRDX5P30044 214 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 KRI1Q8N9T8 703 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 WASF1Q92558 559 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 NGLY1Q96IV0 654 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 MECOMQ03112 1051 aa20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 EARS2Q5JPH6 523 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 NBPF5PQ86XG9 351 aaPredicted RBP20.01■□□□□ 0.79
SQSTM1-202ENST00000389805 TMTC2Q8N394 836 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms