RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 ABCB5Q2M3G0 1257 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 CEP135Q66GS9 1140 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 TAF4BQ92750 862 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 FAM13AO94988 1023 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 KIFC2Q96AC6 838 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 SPAG5Q96R06 1193 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 CTNND2Q9UQB3 1225 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 CHMP2AO43633 222 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 C21orf2O43822 256 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 ZNF75DP51815 510 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 UBXN1Q04323 297 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 CABP7Q86V35 215 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 PSTPIP2Q9H939 334 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 SWAP70Q9UH65 585 aa16.34■□□□□ 0.21
TCOF1-202ENST00000377797 MMP1P03956 469 aa16.33■□□□□ 0.21
TCOF1-202ENST00000377797 CDK8P49336 464 aa16.33■□□□□ 0.21
TCOF1-202ENST00000377797 CCDC174Q6PII3 467 aa16.33■□□□□ 0.21
TCOF1-202ENST00000377797 GOPCQ9HD26 462 aa16.33■□□□□ 0.21
TCOF1-202ENST00000377797 TAF6LQ9Y6J9 622 aa16.33■□□□□ 0.21
TCOF1-202ENST00000377797 SP4Q02446 784 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 CCDC93Q567U6 631 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 CCDC65Q8IXS2 484 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 TTLL6Q8N841 843 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 CHURC1Q8WUH1 139 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 HAUS3Q68CZ6 603 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 GALNT17Q6IS24 598 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 RASGRP4Q8TDF6 673 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 ZNF512BQ96KM6 892 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-202ENST00000377797 BLZF1Q9H2G9 400 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 ATF5Q9Y2D1 282 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-202ENST00000377797 USP8P40818 1118 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 USP17L2Q6R6M4 530 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 DGKHQ86XP1 1220 aa16.33■□□□□ 0.2
TCOF1-202ENST00000377797 MPHOSPH6Q99547 160 aaKnown RBP16.33■□□□□ 0.2
TCOF1-202ENST00000377797 TTLL1O95922 423 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 CASP7P55210 303 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 NEK8Q86SG6 692 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 DNA2P51530 1060 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 TMED8Q6PL24 325 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-202ENST00000377797 NSMFQ6X4W1 530 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 KRBA2Q6ZNG9 492 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.32■□□□□ 0.2
TCOF1-202ENST00000377797 TRMT44Q8IYL2 757 aaKnown RBP16.32■□□□□ 0.2
TCOF1-202ENST00000377797 BCL9O00512 1426 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 GPATCH4Q5T3I0 446 aaKnown RBP16.32■□□□□ 0.2
TCOF1-202ENST00000377797 NCAPH2Q6IBW4 605 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 HS2ST1Q7LGA3 356 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 SLC44A5Q8NCS7 719 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 VPS16Q9H269 839 aa16.32■□□□□ 0.2
TCOF1-202ENST00000377797 PNPLA7Q6ZV29 1317 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 PRPF3O43395 683 aaKnown RBP16.31■□□□□ 0.2
TCOF1-202ENST00000377797 ERLIN1O75477 346 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 HOOK2Q96ED9 719 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 ALDH8A1Q9H2A2 487 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-202ENST00000377797 HOMER2Q9NSB8 354 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 WDR19Q8NEZ3 1342 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 PLEKHA8P1O95397 391 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 EXOSC10Q01780 885 aaKnown RBP16.31■□□□□ 0.2
TCOF1-202ENST00000377797 IQCEQ6IPM2 695 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 DYMQ7RTS9 669 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 LY9Q9HBG7 655 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 TMOD4Q9NZQ9 345 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 PCDHA1Q9Y5I3 950 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 SYNRGQ9UMZ2 1314 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 CACNB3P54284 484 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 PODNQ7Z5L7 613 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 NSUN4Q96CB9 384 aaKnown RBP16.31■□□□□ 0.2
TCOF1-202ENST00000377797 BICD1Q96G01 975 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 DHX36Q9H2U1 1008 aaKnown RBP16.31■□□□□ 0.2
TCOF1-202ENST00000377797 DNAI1Q9UI46 699 aa16.31■□□□□ 0.2
TCOF1-202ENST00000377797 TMEM232C9JQI7 657 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 TRAF5O00463 557 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 ASPRV1Q53RT3 343 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 CNNM4Q6P4Q7 775 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 CTR9Q6PD62 1173 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 PAXIP1Q6ZW49 1069 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-202ENST00000377797 ENAHQ8N8S7 591 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-202ENST00000377797 PPP6R2O75170 966 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 PAK1Q13153 545 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 SPICE1Q8N0Z3 855 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 KANSL2Q9H9L4 492 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 PI4KBQ9UBF8 816 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 ANKRD26Q9UPS8 1709 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 FSD2A1L4K1 749 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 GDF11O95390 407 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 TECP42680 631 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 ZNF827Q17R98 1081 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 CYLC1P35663 651 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-202ENST00000377797 PPP1R2P41236 205 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 EN1Q05925 392 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-202ENST00000377797 CSGALNACT2Q8N6G5 542 aa16.3■□□□□ 0.2
TCOF1-202ENST00000377797 OR52Z1P0C646 297 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 FBXO11Q86XK2 927 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 KNDC1Q76NI1 1749 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 KCTD1Q719H9 257 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 SP8Q8IXZ3 490 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 PDCL2Q8N4E4 241 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 LUC7L2Q9Y383 392 aaKnown RBP16.29■□□□□ 0.2
TCOF1-202ENST00000377797 PCDHA5Q9Y5H7 936 aa16.29■□□□□ 0.2
TCOF1-202ENST00000377797 KIF1AQ12756 1690 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms