RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 IFFO2Q5TF58 517 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 GJB4Q9NTQ9 266 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 CNTNAP5Q8WYK1 1306 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 GLTPD2A6NH11 291 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 EEF2P13639 858 aaKnown RBP21.62■■□□□ 1.05
CLN3-206ENST00000360019 ATP2B2Q01814 1243 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 ICA1Q05084 483 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 PPP4R3BQ5MIZ7 849 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 NBPF12Q5TAG4 269 aaPredicted RBP21.62■■□□□ 1.05
CLN3-206ENST00000360019 TRIM22Q8IYM9 498 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 ALG1Q9BT22 464 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 RNF26Q9BY78 433 aaPredicted RBP21.62■■□□□ 1.05
CLN3-206ENST00000360019 CABP5Q9NP86 173 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 NYAP2Q9P242 653 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 MYH4Q9Y623 1939 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 PALM3A6NDB9 673 aaPredicted RBP21.61■■□□□ 1.05
CLN3-206ENST00000360019 PDHBP11177 359 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 GUCY1B3Q02153 619 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 OTUD7BQ6GQQ9 843 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 FERMT3Q86UX7 667 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 MKL1Q969V6 931 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 C8orf76Q96K31 380 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 GBP4Q96PP9 640 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 PITPNM2Q9BZ72 1349 aa21.61■■□□□ 1.05
CLN3-206ENST00000360019 PHF20L1A8MW92 1017 aa21.6■■□□□ 1.05
CLN3-206ENST00000360019 GOLGA8HP0CJ92 632 aa21.6■■□□□ 1.05
CLN3-206ENST00000360019 MCM4P33991 863 aa21.6■■□□□ 1.05
CLN3-206ENST00000360019 USP17L2Q6R6M4 530 aa21.6■■□□□ 1.05
CLN3-206ENST00000360019 ZBTB21Q9ULJ3 1066 aa21.6■■□□□ 1.05
CLN3-206ENST00000360019 USP17L5A8MUK1 530 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 DEXIO95424 95 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 SNHG28P0DPA3 235 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 CAP2P40123 477 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 SLC35G1Q2M3R5 365 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 PRAMEF18Q5VWM3 479 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 FBXO18Q8NFZ0 1043 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 BAZ2BQ9UIF8 2168 aaKnown RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 hCG_1642624A0A1W2PR95 340 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 PRPF3O43395 683 aaKnown RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 PARP1P09874 1014 aaKnown RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 PKN1Q16512 942 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 FOXD4L6Q3SYB3 417 aaPredicted RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 FOXD4L3Q6VB84 417 aaPredicted RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 PPP2R3BQ9Y5P8 575 aa21.59■■□□□ 1.05
CLN3-206ENST00000360019 V9GY48 417 aaPredicted RBP21.59■■□□□ 1.05
CLN3-206ENST00000360019 POLR2AP24928 1970 aaKnown RBP21.58■■□□□ 1.05
CLN3-206ENST00000360019 GNAQP50148 359 aa21.58■■□□□ 1.05
CLN3-206ENST00000360019 WASF1Q92558 559 aa21.58■■□□□ 1.05
CLN3-206ENST00000360019 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.58■■□□□ 1.05
CLN3-206ENST00000360019 EPHX2P34913 555 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 RESTQ13127 1097 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 MYH6P13533 1939 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 A0A1W2PRG0 241 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 KLRF2D3W0D1 207 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 CYTH3O43739 400 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 AKAP17AQ02040 695 aaKnown RBP21.57■■□□□ 1.04
CLN3-206ENST00000360019 NBR1Q14596 966 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 USP50Q70EL3 339 aaPredicted RBP21.57■■□□□ 1.04
CLN3-206ENST00000360019 CPVLQ9H3G5 476 aa21.57■■□□□ 1.04
CLN3-206ENST00000360019 SSC5DA1L4H1 1573 aa21.56■■□□□ 1.04
CLN3-206ENST00000360019 KRT40Q6A162 431 aa21.56■■□□□ 1.04
CLN3-206ENST00000360019 RGS22Q8NE09 1264 aa21.56■■□□□ 1.04
CLN3-206ENST00000360019 FRMPD2Q68DX3 1309 aaPredicted RBP21.56■■□□□ 1.04
CLN3-206ENST00000360019 POTECB2RU33 542 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 ASPRV1Q53RT3 343 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 FAM173BQ6P4H8 233 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 SHISA4Q96DD7 197 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 LZTS2Q9BRK4 669 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 ASNSP08243 561 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 ZNF543Q08ER8 600 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 DCAF15Q66K64 600 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 MCTP1Q6DN14 999 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 DLK2Q6UY11 383 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 DCPSQ96C86 337 aaKnown RBP21.55■■□□□ 1.04
CLN3-206ENST00000360019 SPZ1Q9BXG8 430 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 ATP6V1DQ9Y5K8 247 aa21.55■■□□□ 1.04
CLN3-206ENST00000360019 SCN4AP35499 1836 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 ECE1P42892 770 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 GMCL1P1Q8NEA9 526 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 ACER1Q8TDN7 264 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 PIBF1Q8WXW3 757 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 ZNF341Q9BYN7 854 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 TAF1DQ9H5J8 278 aaPredicted RBP21.54■■□□□ 1.04
CLN3-206ENST00000360019 FZD1Q9UP38 647 aa21.54■■□□□ 1.04
CLN3-206ENST00000360019 ATAD5Q96QE3 1844 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 WDR90Q96KV7 1748 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 ADM5C9JUS6 153 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 F5H6K3 240 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 VEGFAP15692 232 aaPredicted RBP21.53■■□□□ 1.04
CLN3-206ENST00000360019 KLRC3Q07444 240 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 CCDC84Q86UT8 332 aaPredicted RBP21.53■■□□□ 1.04
CLN3-206ENST00000360019 HOOK2Q96ED9 719 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 UBA5Q9GZZ9 404 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 ZSCAN16Q9H4T2 348 aaPredicted RBP21.53■■□□□ 1.04
CLN3-206ENST00000360019 SYNPO2Q9UMS6 1093 aa21.53■■□□□ 1.04
CLN3-206ENST00000360019 IQCA1LA6NCM1 817 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 SMARCA1P28370 1054 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 INPP5BP32019 993 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 DNM1Q05193 864 aaKnown RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 TRIM29Q14134 588 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms