RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 UBL4BQ8N7F7 174 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 TTC14Q96N46 770 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 CPLX4Q7Z7G2 160 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 CSRNP1Q96S65 589 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 RTEL1Q9NZ71 1219 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 ABCB5Q2M3G0 1257 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 CCDC26Q8TAB7 109 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 PLEKHA4Q9H4M7 779 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 P4HA1P13674 534 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 KRT40Q6A162 431 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 ZBTB38Q8NAP3 1195 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-201ENST00000359947 PARD3Q8TEW0 1356 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 HGSO14964 777 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-201ENST00000359947 GREM2Q9H772 168 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 CHL1O00533 1208 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 NOP9Q86U38 636 aaKnown RBP17.28■□□□□ 0.36
PTPRF-201ENST00000359947 GPBP1Q86WP2 473 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 NELFBQ8WX92 580 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 ZSCAN10Q96SZ4 725 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-201ENST00000359947 STIM2Q9P246 746 aa17.28■□□□□ 0.36
PTPRF-201ENST00000359947 STK24Q9Y6E0 443 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 OATP04181 439 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 CUL4BQ13620 913 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 LRRIQ4A6NIV6 560 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 DLATP10515 647 aaKnown RBP17.27■□□□□ 0.36
PTPRF-201ENST00000359947 BCRP11274 1271 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 FBXO11Q86XK2 927 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.27■□□□□ 0.36
PTPRF-201ENST00000359947 ZNF804BA4D1E1 1349 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 MAN1A1P33908 653 aa17.27■□□□□ 0.36
PTPRF-201ENST00000359947 POLGP54098 1239 aaPredicted RBP17.27■□□□□ 0.35
PTPRF-201ENST00000359947 ZBTB8OSQ8IWT0 167 aa17.27■□□□□ 0.35
PTPRF-201ENST00000359947 MRPL11Q9Y3B7 192 aaKnown RBP17.27■□□□□ 0.35
PTPRF-201ENST00000359947 CLUL1Q15846 466 aa17.27■□□□□ 0.35
PTPRF-201ENST00000359947 ABI1Q8IZP0 508 aa17.27■□□□□ 0.35
PTPRF-201ENST00000359947 SNX21Q969T3 373 aa17.27■□□□□ 0.35
PTPRF-201ENST00000359947 TRIM35Q9UPQ4 493 aa17.27■□□□□ 0.35
PTPRF-201ENST00000359947 UNC13AQ9UPW8 1703 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 HPDP32754 393 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-201ENST00000359947 EEPD1Q7L9B9 569 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 ZNF654Q8IZM8 581 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 C8orf34Q49A92 452 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 MIGA2Q7L4E1 593 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 SEPT10Q9P0V9 454 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 KIF21AQ7Z4S6 1674 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 ZNF202O95125 648 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 SERPINB2P05120 415 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 PPP1R16BQ96T49 567 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 ADPGKQ9BRR6 497 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 ASIC3Q9UHC3 531 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 AKT3Q9Y243 479 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 K7ENM7 598 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 IFNL3Q8IZI9 196 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 VPS52Q8N1B4 723 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 VPS18Q9P253 973 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 HOXB7P09629 217 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 NLRC4Q9NPP4 1024 aa17.26■□□□□ 0.35
PTPRF-201ENST00000359947 GDF11O95390 407 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 KCTD2Q14681 263 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 PTPROQ16827 1216 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 TRMT44Q8IYL2 757 aaKnown RBP17.25■□□□□ 0.35
PTPRF-201ENST00000359947 CCDC110Q8TBZ0 833 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 UTP11Q9Y3A2 253 aaKnown RBP17.25■□□□□ 0.35
PTPRF-201ENST00000359947 CUTAO60888 179 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 ALDH3A1P30838 453 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 KCTD1Q719H9 257 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 PPP1R2P41236 205 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 SF3A3Q12874 501 aaKnown RBP eCLIP17.25■□□□□ 0.351e-6■■■□□ 18.5
PTPRF-201ENST00000359947 FAM207AQ9NSI2 230 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-201ENST00000359947 PCDHA12Q9UN75 941 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 KLRF2D3W0D1 207 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-201ENST00000359947 ABCC2Q92887 1545 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 PNMA1Q8ND90 353 aa17.25■□□□□ 0.35
PTPRF-201ENST00000359947 RIOK3O14730 519 aaKnown RBP17.24■□□□□ 0.35
PTPRF-201ENST00000359947 POSTNQ15063 836 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 SLFN13Q68D06 897 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 DDX25Q9UHL0 483 aaKnown RBP17.24■□□□□ 0.35
PTPRF-201ENST00000359947 BABAM1Q9NWV8 329 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 ERFEQ4G0M1 354 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 RPS6KC1Q96S38 1066 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 KIAA0232Q92628 1395 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 SLC9C1Q4G0N8 1177 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 CCDC89Q8N998 374 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 EPSTI1Q96J88 318 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 CYP4A11Q02928 519 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 KRT81Q14533 505 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 CYP26C1Q6V0L0 522 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 VIMP08670 466 aaKnown RBP17.24■□□□□ 0.35
PTPRF-201ENST00000359947 CDC37L1Q7L3B6 337 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 NAP1L3Q99457 506 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-201ENST00000359947 SEPT9Q9UHD8 586 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-201ENST00000359947 TMEM94Q12767 1356 aa17.24■□□□□ 0.35
PTPRF-201ENST00000359947 PLA2G4DQ86XP0 818 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 LLPHQ9BRT6 129 aaKnown RBP17.23■□□□□ 0.35
PTPRF-201ENST00000359947 OSBPP22059 807 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 TMOD1P28289 359 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 KLHL30Q0D2K2 578 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 TSTA3Q13630 321 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-201ENST00000359947 ATP8A2Q9NTI2 1148 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms