RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 RFC4P35249 363 aa24.84■■□□□ 1.57
SHMT1-202ENST00000352886 PFKFB3Q16875 520 aaPredicted RBP24.84■■□□□ 1.57
SHMT1-202ENST00000352886 VEGFAP15692 232 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-202ENST00000352886 USP5P45974 858 aa24.83■■□□□ 1.57
SHMT1-202ENST00000352886 PTGDRQ13258 359 aa24.83■■□□□ 1.57
SHMT1-202ENST00000352886 NAA30Q147X3 362 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-202ENST00000352886 MED15Q96RN5 788 aa24.83■■□□□ 1.57
SHMT1-202ENST00000352886 VWA3AA6NCI4 1184 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 TFAP4Q01664 338 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 GOLGA8FQ08AF8 430 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 GOLGA8DPQ0D2H9 430 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 PIK3AP1Q6ZUJ8 805 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 KAT14Q9H8E8 782 aa24.83■■□□□ 1.56
SHMT1-202ENST00000352886 KIF5BP33176 963 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 PLCD1P51178 756 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 ATP2C1P98194 919 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 GRAPQ13588 217 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 C12orf60Q5U649 245 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 WDR66Q8TBY9 1149 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 GRAPLQ8TC17 118 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 PAGE5Q96GU1 130 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 BCL11BQ9C0K0 894 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 TMX1Q9H3N1 280 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 MKRN1Q9UHC7 482 aaKnown RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 NFIXQ14938 502 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 PPP4R3BQ5MIZ7 849 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 SH3RF1Q7Z6J0 888 aa24.82■■□□□ 1.56
SHMT1-202ENST00000352886 FNBP4Q8N3X1 1017 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 SH3RF3Q8TEJ3 882 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-202ENST00000352886 LY75O60449 1722 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 ZBTB22O15209 634 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 CASP1P29466 404 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 DYNLL2Q96FJ2 89 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 IL17RBQ9NRM6 502 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 SAMSN1Q9NSI8 373 aaKnown RBP24.81■■□□□ 1.56
SHMT1-202ENST00000352886 LEMD3Q9Y2U8 911 aa24.81■■□□□ 1.56
SHMT1-202ENST00000352886 ADAMTS3O15072 1205 aa24.8■■□□□ 1.56
SHMT1-202ENST00000352886 ERCC5P28715 1186 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-202ENST00000352886 DIXDC1Q155Q3 683 aa24.8■■□□□ 1.56
SHMT1-202ENST00000352886 TRAPPC3LQ5T215 181 aa24.8■■□□□ 1.56
SHMT1-202ENST00000352886 USP21Q9UK80 565 aa24.8■■□□□ 1.56
SHMT1-202ENST00000352886 ZNF215Q9UL58 517 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-202ENST00000352886 THSD7AQ9UPZ6 1657 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 GRIK5Q16478 980 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 SYT10Q6XYQ8 523 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 DGKHQ86XP1 1220 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 CNBD1Q8NA66 436 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 PNMA1Q8ND90 353 aa24.79■■□□□ 1.56
SHMT1-202ENST00000352886 MCM7P33993 719 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 TRAPPC10P48553 1259 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 GPR101Q96P66 508 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-202ENST00000352886 MKNK2Q9HBH9 465 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 XDHP47989 1333 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 NAV1Q8NEY1 1877 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 DPYDQ12882 1025 aa24.78■■□□□ 1.56
SHMT1-202ENST00000352886 TBX2Q13207 712 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-202ENST00000352886 CCP110O43303 1012 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 SPECC1LQ69YQ0 1117 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 KLHL10Q6JEL2 608 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 STAG2Q8N3U4 1231 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 CD44P16070 742 aaKnown RBP24.77■■□□□ 1.56
SHMT1-202ENST00000352886 FAM196AQ6ZSG2 479 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 ZNF804AQ7Z570 1209 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 HOMER1Q86YM7 354 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 GPKOWQ92917 476 aaPredicted RBP eCLIP24.77■■□□□ 1.56
SHMT1-202ENST00000352886 GSDMAQ96QA5 445 aa24.77■■□□□ 1.56
SHMT1-202ENST00000352886 BAG3O95817 575 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 GSTO1P78417 241 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 TMEM139Q8IV31 216 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 TGFBRAP1Q8WUH2 860 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 ROBO3Q96MS0 1386 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 USP17L3A6NCW0 530 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 USP17L4A6NCW7 530 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 CALML3P27482 149 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 USP17L1Q7RTZ2 530 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 AMOTL1Q8IY63 956 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 STAMQ92783 540 aa24.76■■□□□ 1.55
SHMT1-202ENST00000352886 TSPY3P0CV98 308 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 TSPY8P0CW00 308 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 IL17AQ16552 155 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 CT47A1Q5JQC4 288 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-202ENST00000352886 SMYD4Q8IYR2 804 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-202ENST00000352886 BLIDQ8IZY5 108 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 SYNRGQ9UMZ2 1314 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 STX17P56962 302 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 CUL4BQ13620 913 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 ANKS1AQ92625 1134 aa24.75■■□□□ 1.55
SHMT1-202ENST00000352886 IGSF3O75054 1194 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 TUBB4AP04350 444 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 NT5C2P49902 561 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 E2F4Q16254 413 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 SPATA1Q5VX52 437 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 IQUBQ8NA54 791 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 SLC44A5Q8NCS7 719 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 FAM205AQ6ZU69 1335 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 ARHGAP6O43182 974 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 SLU7O95391 586 aaKnown RBP24.74■■□□□ 1.55
SHMT1-202ENST00000352886 PPP4CP60510 307 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 GRM4Q14833 912 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 NR1I3Q14994 352 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms