RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 KIF5BP33176 963 aa25.21■■□□□ 1.63
UPF3A-201ENST00000351487 TRMT44Q8IYL2 757 aaKnown RBP25.21■■□□□ 1.63
UPF3A-201ENST00000351487 ZNF174Q15697 407 aa25.21■■□□□ 1.63
UPF3A-201ENST00000351487 GSDMAQ96QA5 445 aa25.21■■□□□ 1.63
UPF3A-201ENST00000351487 MCM9Q9NXL9 1143 aa25.21■■□□□ 1.63
UPF3A-201ENST00000351487 CGNQ9P2M7 1197 aaKnown RBP25.21■■□□□ 1.63
UPF3A-201ENST00000351487 CCNL1Q9UK58 526 aaPredicted RBP25.21■■□□□ 1.63
UPF3A-201ENST00000351487 DPYDQ12882 1025 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 PTGDRQ13258 359 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 CCDC24Q8N4L8 307 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 ARHGEF1Q92888 912 aaKnown RBP25.2■■□□□ 1.62
UPF3A-201ENST00000351487 ARHGAP6O43182 974 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 SLU7O95391 586 aaKnown RBP25.2■■□□□ 1.62
UPF3A-201ENST00000351487 CDK11BP21127 795 aaKnown RBP25.2■■□□□ 1.62
UPF3A-201ENST00000351487 NAA30Q147X3 362 aaPredicted RBP25.2■■□□□ 1.62
UPF3A-201ENST00000351487 C12orf60Q5U649 245 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 SPECC1LQ69YQ0 1117 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 AMIGO3Q86WK7 504 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 DGKHQ86XP1 1220 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 WDR66Q8TBY9 1149 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 ANKS1AQ92625 1134 aa25.2■■□□□ 1.62
UPF3A-201ENST00000351487 PRKCSHP14314 528 aaPredicted RBP25.19■■□□□ 1.62
UPF3A-201ENST00000351487 NLRP5P59047 1200 aa25.19■■□□□ 1.62
UPF3A-201ENST00000351487 ETF1P62495 437 aaKnown RBP25.18■■□□□ 1.62
UPF3A-201ENST00000351487 CUL4BQ13620 913 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 SYT10Q6XYQ8 523 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 NGLY1Q96IV0 654 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 C8orf37Q96NL8 207 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 SAMSN1Q9NSI8 373 aaKnown RBP25.18■■□□□ 1.62
UPF3A-201ENST00000351487 LEMD3Q9Y2U8 911 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 PHLPP2Q6ZVD8 1323 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 USP17L8P0C7I0 530 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 CALML3P27482 149 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 AFMP43652 599 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 HSP90AA4PQ58FG1 418 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 PYM1Q9BRP8 204 aaKnown RBP25.18■■□□□ 1.62
UPF3A-201ENST00000351487 SH3GLB2Q9NR46 395 aa25.18■■□□□ 1.62
UPF3A-201ENST00000351487 A0A1B0GTH6 734 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 VWA3AA6NCI4 1184 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 TOM1O60784 492 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 SPATA1Q5VX52 437 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 PIK3AP1Q6ZUJ8 805 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 KAT14Q9H8E8 782 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 LDHBP07195 334 aaKnown RBP25.17■■□□□ 1.62
UPF3A-201ENST00000351487 PIP4K2BP78356 416 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 GRAPQ13588 217 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 NR1I3Q14994 352 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 E2F4Q16254 413 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 CCDC93Q567U6 631 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 GRAPLQ8TC17 118 aaPredicted RBP25.17■■□□□ 1.62
UPF3A-201ENST00000351487 JAG2Q9Y219 1238 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 SYNRGQ9UMZ2 1314 aa25.17■■□□□ 1.62
UPF3A-201ENST00000351487 CDK5RAP2Q96SN8 1893 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 PTPN21Q16825 1174 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 TC2NQ8N9U0 490 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 FEZ1Q99689 392 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 IL17RBQ9NRM6 502 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 STX10O60499 249 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 TFAP4Q01664 338 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 GOLGA8FQ08AF8 430 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 GOLGA8DPQ0D2H9 430 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 APTXQ7Z2E3 356 aaKnown RBP25.16■■□□□ 1.62
UPF3A-201ENST00000351487 REXO1L1PQ8IX06 675 aa25.16■■□□□ 1.62
UPF3A-201ENST00000351487 FNBP4Q8N3X1 1017 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-201ENST00000351487 ZSCAN12O43309 604 aa25.15■■□□□ 1.62
UPF3A-201ENST00000351487 VEGFAP15692 232 aaPredicted RBP25.15■■□□□ 1.62
UPF3A-201ENST00000351487 CD44P16070 742 aaKnown RBP25.15■■□□□ 1.62
UPF3A-201ENST00000351487 CCDC178Q5BJE1 867 aa25.15■■□□□ 1.62
UPF3A-201ENST00000351487 ARL6IP4Q66PJ3 421 aaKnown RBP25.15■■□□□ 1.62
UPF3A-201ENST00000351487 TRIM65Q6PJ69 517 aa25.15■■□□□ 1.62
UPF3A-201ENST00000351487 USP5P45974 858 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 PPP4CP60510 307 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 GSTO1P78417 241 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 GRM4Q14833 912 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 C15orf52Q6ZUT6 534 aaKnown RBP25.14■■□□□ 1.62
UPF3A-201ENST00000351487 HOMER1Q86YM7 354 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 IQUBQ8NA54 791 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 PNMA1Q8ND90 353 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 BAG1Q99933 345 aaPredicted RBP25.14■■□□□ 1.62
UPF3A-201ENST00000351487 XDHP47989 1333 aa25.14■■□□□ 1.62
UPF3A-201ENST00000351487 CDKAL1Q5VV42 579 aa25.14■■□□□ 1.61
UPF3A-201ENST00000351487 TCP11L1Q9NUJ3 509 aa25.14■■□□□ 1.61
UPF3A-201ENST00000351487 ANKIB1Q9P2G1 1089 aa25.14■■□□□ 1.61
UPF3A-201ENST00000351487 DDX60LQ5H9U9 1706 aaKnown RBP25.13■■□□□ 1.61
UPF3A-201ENST00000351487 PDXDC2PQ6P474 469 aa25.13■■□□□ 1.61
UPF3A-201ENST00000351487 SMAP1Q8IYB5 467 aaPredicted RBP25.13■■□□□ 1.61
UPF3A-201ENST00000351487 BLIDQ8IZY5 108 aa25.13■■□□□ 1.61
UPF3A-201ENST00000351487 SH3RF3Q8TEJ3 882 aaPredicted RBP25.13■■□□□ 1.61
UPF3A-201ENST00000351487 PPP1R3GB7ZBB8 358 aa25.13■■□□□ 1.61
UPF3A-201ENST00000351487 CASP1P29466 404 aa25.13■■□□□ 1.61
UPF3A-201ENST00000351487 GNAQP50148 359 aa25.13■■□□□ 1.61
UPF3A-201ENST00000351487 ADAMTS3O15072 1205 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 NPHP1O15259 732 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 BAG3O95817 575 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 MCM7P33993 719 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 IL17AQ16552 155 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 PCDHA4Q9UN74 947 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 PPP2R2CQ9Y2T4 447 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 GOLGA6L9A6NEM1 432 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 ZNF804AQ7Z570 1209 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms