RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 TPM4P67936 248 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 RBM43Q6ZSC3 357 aaKnown RBP15.87■□□□□ 0.13
TRIM4-201ENST00000349062 TMTC3Q6ZXV5 915 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 COL23A1Q86Y22 540 aaPredicted RBP15.87■□□□□ 0.13
TRIM4-201ENST00000349062 LDHCP07864 332 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 C12orf60Q5U649 245 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 DPP8Q6V1X1 898 aaPredicted RBP15.87■□□□□ 0.13
TRIM4-201ENST00000349062 CGNQ9P2M7 1197 aaKnown RBP15.87■□□□□ 0.13
TRIM4-201ENST00000349062 CUTAO60888 179 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 KRBA2Q6ZNG9 492 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 RNF26Q9BY78 433 aaPredicted RBP15.87■□□□□ 0.13
TRIM4-201ENST00000349062 FANCLQ9NW38 375 aa15.87■□□□□ 0.13
TRIM4-201ENST00000349062 SKILP12757 684 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 SCG2P13521 617 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 CHRNA5P30532 468 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 TTC38Q5R3I4 469 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 KLHL34Q8N239 644 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 PPP1R1BQ9UD71 204 aaPredicted RBP15.86■□□□□ 0.13
TRIM4-201ENST00000349062 CICQ96RK0 1608 aaPredicted RBP15.86■□□□□ 0.13
TRIM4-201ENST00000349062 NLRP12P59046 1061 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 INF2Q27J81 1249 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 KIAA1524Q8TCG1 905 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 SYMPKQ92797 1274 aaKnown RBP15.86■□□□□ 0.13
TRIM4-201ENST00000349062 GSTO1P78417 241 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 CPLX3Q8WVH0 158 aa15.86■□□□□ 0.13
TRIM4-201ENST00000349062 CCDC194A0A1B0GVG4 234 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 PP2D1A8MPX8 630 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 TNNT1P13805 278 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 CDK8P49336 464 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 RESP18Q5W5W9 173 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 RCSD1Q6JBY9 416 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 DPF2Q92785 391 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 SMARCE1Q969G3 411 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 TMEM47Q9BQJ4 181 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 FOXP1Q9H334 677 aaPredicted RBP15.85■□□□□ 0.13
TRIM4-201ENST00000349062 ANAPC4Q9UJX5 808 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 BTAF1O14981 1849 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 KIF5BP33176 963 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 PLA2G4DQ86XP0 818 aa15.85■□□□□ 0.13
TRIM4-201ENST00000349062 FBXO2Q9UK22 296 aaPredicted RBP15.85■□□□□ 0.13
TRIM4-201ENST00000349062 SCAF8Q9UPN6 1271 aaKnown RBP15.85■□□□□ 0.13
TRIM4-201ENST00000349062 USP27XA6NNY8 438 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 ATP2B4P23634 1241 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 POSTNQ15063 836 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 JAKMIP3Q5VZ66 844 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 KLRF2D3W0D1 207 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 POLRMTO00411 1230 aaKnown RBP15.84■□□□□ 0.13
TRIM4-201ENST00000349062 PPP6R2O75170 966 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 UBASH3AP57075 661 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 USP40Q9NVE5 1235 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.84■□□□□ 0.13
TRIM4-201ENST00000349062 TULP1O00294 542 aaPredicted RBP15.84■□□□□ 0.13
TRIM4-201ENST00000349062 PRPF3O43395 683 aaKnown RBP15.84■□□□□ 0.13
TRIM4-201ENST00000349062 SLC16A2P36021 539 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 NAPAP54920 295 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 TYW1BQ6NUM6 668 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 CEP95Q96GE4 821 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 RBM28Q9NW13 759 aaKnown RBP15.84■□□□□ 0.13
TRIM4-201ENST00000349062 PARP3Q9Y6F1 533 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 CNTNAP5Q8WYK1 1306 aa15.84■□□□□ 0.13
TRIM4-201ENST00000349062 TMEM232C9JQI7 657 aa15.83■□□□□ 0.13
TRIM4-201ENST00000349062 FANCCQ00597 558 aa15.83■□□□□ 0.13
TRIM4-201ENST00000349062 LETM2Q2VYF4 491 aa15.83■□□□□ 0.13
TRIM4-201ENST00000349062 CEP131Q9UPN4 1083 aa15.83■□□□□ 0.13
TRIM4-201ENST00000349062 A0A087X0B3 334 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 CALM1P0DP23 149 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 CALM2P0DP24 149 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 CALM3P0DP25 149 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 CCDC96Q2M329 555 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 SHROOM1Q2M3G4 852 aaPredicted RBP15.83■□□□□ 0.12
TRIM4-201ENST00000349062 RTFDC1Q9BY42 306 aaPredicted RBP15.83■□□□□ 0.12
TRIM4-201ENST00000349062 STK36Q9NRP7 1315 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 PTPREP23469 700 aa15.83■□□□□ 0.12
TRIM4-201ENST00000349062 BIN2Q9UBW5 565 aaPredicted RBP15.83■□□□□ 0.12
TRIM4-201ENST00000349062 RASA1P20936 1047 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 PHF20Q9BVI0 1012 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 FAM205AQ6ZU69 1335 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 ERICH4A6NGS2 130 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 USP17L5A8MUK1 530 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 BBOX1O75936 387 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 FUT2Q10981 343 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 IKQ13123 557 aaPredicted RBP15.82■□□□□ 0.12
TRIM4-201ENST00000349062 FLT1P17948 1338 aa15.82■□□□□ 0.12
TRIM4-201ENST00000349062 ERCC3P19447 782 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 SNAP25P60880 206 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 KARSQ15046 597 aaKnown RBP15.81■□□□□ 0.12
TRIM4-201ENST00000349062 CCDC112Q8NEF3 446 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 COA7Q96BR5 231 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 HOOK1Q9UJC3 728 aaKnown RBP15.81■□□□□ 0.12
TRIM4-201ENST00000349062 MAN1B1Q9UKM7 699 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 NFE2L3Q9Y4A8 694 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 DAGLAQ9Y4D2 1042 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 DDAH1O94760 285 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 PIGSQ96S52 555 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 SAMSN1Q9NSI8 373 aaKnown RBP15.81■□□□□ 0.12
TRIM4-201ENST00000349062 ORC4O43929 436 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 BMP6P22004 513 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 FMR1Q06787 632 aaKnown RBP eCLIP15.81■□□□□ 0.128e-6■■■□□ 16.2
TRIM4-201ENST00000349062 NFIAQ12857 509 aa15.81■□□□□ 0.12
TRIM4-201ENST00000349062 LRRC8AQ8IWT6 810 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms