RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NCBP1Q09161 790 aaKnown RBP17.63■□□□□ 0.41
UPF3B-202ENST00000345865 PIK3AP1Q6ZUJ8 805 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 SH3RF1Q7Z6J0 888 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 STAG2Q8N3U4 1231 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 PPP1R13BQ96KQ4 1090 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 CBFA2T2O43439 604 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 SLFN14P0C7P3 912 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 KANK3Q6NY19 840 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 ENOX1Q8TC92 643 aaKnown RBP17.63■□□□□ 0.41
UPF3B-202ENST00000345865 PAGE5Q96GU1 130 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 BRMS1Q9HCU9 246 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 LEMD3Q9Y2U8 911 aa17.63■□□□□ 0.41
UPF3B-202ENST00000345865 VWA3AA6NCI4 1184 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 USP17L3A6NCW0 530 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 USP17L4A6NCW7 530 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 USP5P45974 858 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 NLRP5P59047 1200 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 ATP2C1P98194 919 aaPredicted RBP17.62■□□□□ 0.41
UPF3B-202ENST00000345865 IL17AQ16552 155 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 SLC35G1Q2M3R5 365 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 USP17L1Q7RTZ2 530 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 TRIML1Q8N9V2 468 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 CNBD1Q8NA66 436 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 SLC44A5Q8NCS7 719 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 WDR66Q8TBY9 1149 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 FERMT2Q96AC1 680 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 BCL11BQ9C0K0 894 aaPredicted RBP17.62■□□□□ 0.41
UPF3B-202ENST00000345865 TMX1Q9H3N1 280 aa17.62■□□□□ 0.41
UPF3B-202ENST00000345865 SAMSN1Q9NSI8 373 aaKnown RBP17.62■□□□□ 0.41
UPF3B-202ENST00000345865 CD44P16070 742 aaKnown RBP17.61■□□□□ 0.41
UPF3B-202ENST00000345865 PLCD1P51178 756 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 XDHP47989 1333 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 FAM205AQ6ZU69 1335 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 MYO1BO43795 1136 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 KCNJ6P48051 423 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 PRR5LQ6MZQ0 368 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 TYW1BQ6NUM6 668 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 TMED8Q6PL24 325 aaPredicted RBP17.61■□□□□ 0.41
UPF3B-202ENST00000345865 PNMA1Q8ND90 353 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 TGFBRAP1Q8WUH2 860 aa17.61■□□□□ 0.41
UPF3B-202ENST00000345865 PSDA5PKW4 1024 aaPredicted RBP17.6■□□□□ 0.41
UPF3B-202ENST00000345865 GPSM2P81274 684 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 DGKHQ86XP1 1220 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 STAMQ92783 540 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 GPKOWQ92917 476 aaPredicted RBP eCLIP17.6■□□□□ 0.414e-6■□□□□ 8.7
UPF3B-202ENST00000345865 KAT14Q9H8E8 782 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 BMP15O95972 392 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 TOP1P11387 765 aaKnown RBP17.6■□□□□ 0.41
UPF3B-202ENST00000345865 DPYDQ12882 1025 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 TMEM139Q8IV31 216 aa17.6■□□□□ 0.41
UPF3B-202ENST00000345865 NOL10Q9BSC4 688 aaKnown RBP17.6■□□□□ 0.41
UPF3B-202ENST00000345865 ROBO3Q96MS0 1386 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 MCM7P33993 719 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 PPP4CP60510 307 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 TBX2Q13207 712 aaPredicted RBP17.59■□□□□ 0.41
UPF3B-202ENST00000345865 SMYD4Q8IYR2 804 aaPredicted RBP17.59■□□□□ 0.41
UPF3B-202ENST00000345865 ANKS1AQ92625 1134 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 MAD2L2Q9UI95 211 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 CDK5RAP2Q96SN8 1893 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.59■□□□□ 0.41
UPF3B-202ENST00000345865 KIF5BP33176 963 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 E2F4Q16254 413 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 MAPKAPK5Q8IW41 473 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 RASGRP4Q8TDF6 673 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 MTRQ99707 1265 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 RTFDC1Q9BY42 306 aaPredicted RBP17.59■□□□□ 0.41
UPF3B-202ENST00000345865 MKNK2Q9HBH9 465 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 SAP30BPQ9UHR5 308 aaKnown RBP17.59■□□□□ 0.41
UPF3B-202ENST00000345865 DACH1Q9UI36 760 aa17.59■□□□□ 0.41
UPF3B-202ENST00000345865 NAV1Q8NEY1 1877 aa17.58■□□□□ 0.41
UPF3B-202ENST00000345865 CYTH3O43739 400 aa17.58■□□□□ 0.41
UPF3B-202ENST00000345865 CUL4BQ13620 913 aa17.58■□□□□ 0.41
UPF3B-202ENST00000345865 RASGRP2Q7LDG7 609 aa17.58■□□□□ 0.41
UPF3B-202ENST00000345865 CDK11BP21127 795 aaKnown RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 ERCC5P28715 1186 aaPredicted RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 DHX8Q14562 1220 aaKnown RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 APTXQ7Z2E3 356 aaKnown RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 ZNF804AQ7Z570 1209 aa17.58■□□□□ 0.4
UPF3B-202ENST00000345865 C4orf32Q8N8J7 132 aa17.58■□□□□ 0.4
UPF3B-202ENST00000345865 KIF18AQ8NI77 898 aa17.58■□□□□ 0.4
UPF3B-202ENST00000345865 UBE2Q2Q8WVN8 375 aa17.58■□□□□ 0.4
UPF3B-202ENST00000345865 GJD4Q96KN9 370 aaPredicted RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 CD209Q9NNX6 404 aa17.58■□□□□ 0.4
UPF3B-202ENST00000345865 ZNF215Q9UL58 517 aaPredicted RBP17.58■□□□□ 0.4
UPF3B-202ENST00000345865 TRAPPC10P48553 1259 aa17.57■□□□□ 0.4
UPF3B-202ENST00000345865 STX17P56962 302 aa17.57■□□□□ 0.4
UPF3B-202ENST00000345865 GRM4Q14833 912 aa17.57■□□□□ 0.4
UPF3B-202ENST00000345865 C15orf52Q6ZUT6 534 aaKnown RBP17.57■□□□□ 0.4
UPF3B-202ENST00000345865 PDCL2Q8N4E4 241 aa17.57■□□□□ 0.4
UPF3B-202ENST00000345865 MTMR7Q9Y216 660 aa17.57■□□□□ 0.4
UPF3B-202ENST00000345865 M0R2N6 131 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 BAG3O95817 575 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 TSPY3P0CV98 308 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 TSPY8P0CW00 308 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 RASA1P20936 1047 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 CDC25AP30304 524 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 SYCP1Q15431 976 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 CRY2Q49AN0 593 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 KLHL10Q6JEL2 608 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 SYT10Q6XYQ8 523 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms