RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SLF2Q8IX21 1173 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 LRRC45Q96CN5 670 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 USH1CQ9Y6N9 552 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 FAM169AQ9Y6X4 670 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 RGS16O15492 202 aaPredicted RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 SORBS3O60504 671 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 CASP1P29466 404 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 ARHGAP25P42331 645 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 TPD52P55327 224 aaPredicted RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 RASSF7Q02833 373 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 THOC1Q96FV9 657 aaKnown RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 MRFAP1L1Q96HT8 127 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 IFT74Q96LB3 600 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 TSGA10Q9BZW7 698 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 ZSWIM6Q9HCJ5 1215 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 EPN1Q9Y6I3 576 aaPredicted RBP9.63□□□□□ -0.87
RTN3-202ENST00000339997 PIK3C2GO75747 1445 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 ADGRL1O94910 1474 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 MAP3K5Q99683 1374 aa9.63□□□□□ -0.87
RTN3-202ENST00000339997 KRIT1O00522 736 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 RNF40O75150 1001 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 LDHBP07195 334 aaKnown RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 CYP21A2P08686 494 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 PLCD1P51178 756 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 NCBP1Q09161 790 aaKnown RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 BRD3Q15059 726 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CCDC38Q502W7 563 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 RUFY4Q6ZNE9 571 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 MAPKAPK5Q8IW41 473 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 SMC1BQ8NDV3 1235 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 MKRN1Q9UHC7 482 aaKnown RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 FRMD4BQ9Y2L6 1034 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 PZPP20742 1482 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 KDM5CP41229 1560 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 RIMS2Q9UQ26 1411 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 TUBB4BP68371 445 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 TCP10Q12799 353 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 HHATQ5VTY9 493 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CTAGE3PQ8IX95 158 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 VPS37BQ9H9H4 285 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 TTLL3Q9Y4R7 772 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 ABCC10Q5T3U5 1492 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CD109Q6YHK3 1445 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 PRAMEF22A3QJZ6 481 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 STX2P32856 288 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CACNB1Q02641 598 aaPredicted RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 NR5A1Q13285 461 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 LMNTD2Q8IXW0 634 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CPXCR1Q8N123 301 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 TMEM87BQ96K49 555 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 KRT12Q99456 494 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 METTL22Q9BUU2 404 aaPredicted RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 FAM184BQ9ULE4 1060 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 GPATCH8Q9UKJ3 1502 aaKnown RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 RTL9Q8NET4 1388 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 FAM135AQ9P2D6 1515 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 USP17L12C9JPN9 530 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 USP17L21D6R901 530 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 GCNT3O95395 438 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 EPB41P11171 864 aaKnown RBP9.62□□□□□ -0.87
RTN3-202ENST00000339997 RBL2Q08999 1139 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 MORC3Q14149 939 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 PROSER3Q2NL68 480 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CNNM4Q6P4Q7 775 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 NOSTRINQ8IVI9 506 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 CACNA2D3Q8IZS8 1091 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 RILPQ96NA2 401 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 PTPN22Q9Y2R2 807 aa9.62□□□□□ -0.87
RTN3-202ENST00000339997 EXOC3O60645 756 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 PDIA3P30101 505 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 POLR2FP61218 127 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 TFAP4Q01664 338 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 CABP7Q86V35 215 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 GSPT2Q8IYD1 628 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 IL17REQ8NFR9 667 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 TEX13AQ9BXU3 409 aaPredicted RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 B4DLN1 442 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 RPL13P26373 211 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 MAN1A1P33908 653 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 C2orf54Q08AI8 447 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 SFMBT2Q5VUG0 894 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 CASC4Q6P4E1 433 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 PUS3Q9BZE2 481 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 LSG1Q9H089 658 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 PNMA6AP0CW24 399 aaPredicted RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 CYP2J2P51589 502 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 LRRC41Q15345 812 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 ANKRD20A3Q5VUR7 823 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 GSDMBQ8TAX9 411 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 GOLGA5Q8TBA6 731 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 LSM14BQ9BX40 385 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 SPTLC3Q9NUV7 552 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 FLT4P35916 1363 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 SRGAP2O75044 1071 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 GRM1Q13255 1194 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 PTGDRQ13258 359 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 TERF2Q15554 542 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 DENND2CQ68D51 928 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 MYCT1Q8N699 235 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 ZC3H12CQ9C0D7 883 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms