RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TMTC2Q8N394 836 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 GJA10Q969M2 543 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 NBPF3Q9H094 633 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 NLRC4Q9NPP4 1024 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 TCP11L1Q9NUJ3 509 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 IMPACTQ9P2X3 320 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 SEC63Q9UGP8 760 aaKnown RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 DDX41Q9UJV9 622 aaKnown RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 CTAGE9A4FU28 777 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 FMNL1O95466 1100 aaPredicted RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 IFNAR1P17181 557 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 CDC25BP30305 580 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 CXCR5P32302 372 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 LRRC41Q15345 812 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 MLKLQ8NB16 471 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 IL17RAQ96F46 866 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 SLC4A9Q96Q91 983 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 FOXP2O15409 715 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 SETQ01105 290 aaPredicted RBP13.46□□□□□ -0.25
USP1-201ENST00000339950 PDE4DQ08499 809 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 TBC1D8BQ0IIM8 1120 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 NELFCDQ8IXH7 590 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 GSPT2Q8IYD1 628 aaKnown RBP13.46□□□□□ -0.25
USP1-201ENST00000339950 GOLGA1Q92805 767 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 ZNF622Q969S3 477 aaKnown RBP eCLIP13.46□□□□□ -0.253e-7■■□□□ 13.6
USP1-201ENST00000339950 SLC39A2Q9NP94 309 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 RSPH14Q9UHP6 348 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 CTAGE15A4D2H0 777 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 CTAGE8P0CG41 777 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 LRP10Q7Z4F1 713 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 CTAGE6Q86UF2 777 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 CTAGE4Q8IX94 777 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 STAG2Q8N3U4 1231 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 TSPYL1Q9H0U9 437 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 HDAC6Q9UBN7 1215 aa13.46□□□□□ -0.25
USP1-201ENST00000339950 RFC4P35249 363 aa13.46□□□□□ -0.26
USP1-201ENST00000339950 TOB1P50616 345 aaPredicted RBP13.46□□□□□ -0.26
USP1-201ENST00000339950 RPS8P62241 208 aaKnown RBP13.46□□□□□ -0.26
USP1-201ENST00000339950 RESP18Q5W5W9 173 aa13.46□□□□□ -0.26
USP1-201ENST00000339950 USP17L2Q6R6M4 530 aa13.46□□□□□ -0.26
USP1-201ENST00000339950 LRRC47Q8N1G4 583 aaKnown RBP13.46□□□□□ -0.26
USP1-201ENST00000339950 MRPL44Q9H9J2 332 aaKnown RBP13.46□□□□□ -0.26
USP1-201ENST00000339950 LUC7L2Q9Y383 392 aaKnown RBP13.46□□□□□ -0.26
USP1-201ENST00000339950 WNT7AO00755 349 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 CAPN2P17655 700 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 TCP10Q12799 353 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 NCAPHQ15003 741 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 C3orf67Q6ZVT6 689 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 RUFY1Q96T51 708 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 MROH5Q6ZUA9 1318 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 ARID4AP29374 1257 aaPredicted RBP13.45□□□□□ -0.26
USP1-201ENST00000339950 RBM43Q6ZSC3 357 aaKnown RBP13.45□□□□□ -0.26
USP1-201ENST00000339950 CSGALNACT2Q8N6G5 542 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 PNMA1Q8ND90 353 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 PARD6BQ9BYG5 372 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 ALDH8A1Q9H2A2 487 aaPredicted RBP13.45□□□□□ -0.26
USP1-201ENST00000339950 EXOC1Q9NV70 894 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 LDHBP07195 334 aaKnown RBP13.45□□□□□ -0.26
USP1-201ENST00000339950 SMC1AQ14683 1233 aaKnown RBP13.45□□□□□ -0.26
USP1-201ENST00000339950 KANK3Q6NY19 840 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 PAGE5Q96GU1 130 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 C3P01024 1663 aa13.45□□□□□ -0.26
USP1-201ENST00000339950 KIF5BP33176 963 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 PAK1Q13153 545 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 PDE11AQ9HCR9 933 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 B4DLN1 442 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 PNMA6AP0CW24 399 aaPredicted RBP13.44□□□□□ -0.26
USP1-201ENST00000339950 BMP6P22004 513 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 PLS1Q14651 629 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 SPA17Q15506 151 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 KLHL34Q8N239 644 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 AGLP35573 1532 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 MECOMQ03112 1051 aa13.44□□□□□ -0.26
USP1-201ENST00000339950 PAXIP1Q6ZW49 1069 aaPredicted RBP13.44□□□□□ -0.26
USP1-201ENST00000339950 RPGRQ92834 1020 aaKnown RBP13.44□□□□□ -0.26
USP1-201ENST00000339950 PALLDQ8WX93 1383 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 FAM196BA6NMK8 535 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 ERLIN1O75477 346 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 GNAT2P19087 354 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 PTPREP23469 700 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 SCNN1DP51172 638 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 MORC3Q14149 939 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 CCDC40Q4G0X9 1142 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 TYW1BQ6NUM6 668 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 CHP1Q99653 195 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 KCNJ18B7U540 433 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 PPP6R2O75170 966 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
USP1-201ENST00000339950 KCNJ12Q14500 433 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 FAM217BQ9NTX9 383 aaPredicted RBP13.43□□□□□ -0.26
USP1-201ENST00000339950 PSMA7O14818 248 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 SLURP2P0DP57 97 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 SNAP25P60880 206 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 LLGL1Q15334 1064 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 TMX4Q9H1E5 349 aaPredicted RBP13.43□□□□□ -0.26
USP1-201ENST00000339950 PKD2L1Q9P0L9 805 aa13.43□□□□□ -0.26
USP1-201ENST00000339950 ABL1P00519 1130 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 SLC16A2P36021 539 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 FXR1P51114 621 aaKnown RBP eCLIP13.42□□□□□ -0.263e-6■■■□□ 18.3
USP1-201ENST00000339950 PTPAQ15257 358 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms