RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MPHOSPH10O00566 681 aaKnown RBP15.45■□□□□ 0.06
HMGB1-202ENST00000339872 SCG2P13521 617 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 PTGER2P43116 358 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 NOVP48745 357 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 EIF6P56537 245 aaKnown RBP15.45■□□□□ 0.06
HMGB1-202ENST00000339872 NR5A1Q13285 461 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 SH3BP5LQ7L8J4 393 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 CLEC10AQ8IUN9 316 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 KCNG4Q8TDN1 519 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 TRIM34Q9BYJ4 488 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 DACT1Q9NYF0 836 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 PI4KBQ9UBF8 816 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 SPDYE2BA6NHP3 402 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 NFKBIEO00221 500 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 SPTLC2O15270 562 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 LETM1O95202 739 aaPredicted RBP15.44■□□□□ 0.06
HMGB1-202ENST00000339872 SPDYE6P0CI01 402 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 GOLGA8HP0CJ92 632 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 DLGAP5Q15398 846 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 OXER1Q8TDS5 423 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 JDP2Q8WYK2 163 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 PHF20Q9BVI0 1012 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 TMOD2Q9NZR1 351 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 IGKV6D-41A0A0C4DH26 115 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 PALM3A6NDB9 673 aaPredicted RBP15.44■□□□□ 0.06
HMGB1-202ENST00000339872 ENTPD3O75355 529 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 NR1I2O75469 434 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 CXCL9Q07325 125 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 PFKFB3Q16875 520 aaPredicted RBP15.44■□□□□ 0.06
HMGB1-202ENST00000339872 CCAR1Q8IX12 1150 aaKnown RBP15.44■□□□□ 0.06
HMGB1-202ENST00000339872 LRRC47Q8N1G4 583 aaKnown RBP15.44■□□□□ 0.06
HMGB1-202ENST00000339872 NUP62CLQ9H1M0 184 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 PCDHA7Q9UN72 937 aa15.44■□□□□ 0.06
HMGB1-202ENST00000339872 CLRN2A0PK11 232 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 PARP1P09874 1014 aaKnown RBP15.43■□□□□ 0.06
HMGB1-202ENST00000339872 KRT2P35908 639 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 AGBL3Q8NEM8 1001 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 DDX19AQ9NUU7 478 aaKnown RBP15.43■□□□□ 0.06
HMGB1-202ENST00000339872 ATRNL1Q5VV63 1379 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 KLRF2D3W0D1 207 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 TTLL1O95922 423 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 USP17L2Q6R6M4 530 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 TSPY26PQ9H489 355 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 BRMS1Q9HCU9 246 aa15.43■□□□□ 0.06
HMGB1-202ENST00000339872 COL2A1P02458 1487 aaPredicted RBP15.42■□□□□ 0.06
HMGB1-202ENST00000339872 TCP10L2B9ZVM9 353 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 VEGFAP15692 232 aaPredicted RBP15.42■□□□□ 0.06
HMGB1-202ENST00000339872 SLC39A14Q15043 492 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 SLC35G1Q2M3R5 365 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CIAPIN1Q6FI81 312 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CCDC73Q6ZRK6 1079 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CCDC17Q96LX7 622 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 LZTS2Q9BRK4 669 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 PANK2Q9BZ23 570 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 GOLPH3LQ9H4A5 285 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CLIP2Q9UDT6 1046 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 ARFGEF1Q9Y6D6 1849 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CYTH3O43739 400 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CAMK4Q16566 473 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CERKLQ49MI3 558 aaPredicted RBP15.42■□□□□ 0.06
HMGB1-202ENST00000339872 ADALQ6DHV7 355 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 FSIP1Q8NA03 581 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 RBSNQ9H1K0 784 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 CPVLQ9H3G5 476 aa15.42■□□□□ 0.06
HMGB1-202ENST00000339872 USP17L5A8MUK1 530 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 PDHBP11177 359 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 MARCKSP29966 332 aaPredicted RBP15.41■□□□□ 0.06
HMGB1-202ENST00000339872 ATP2B2Q01814 1243 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 RILPL1Q5EBL4 403 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 FOXP4Q8IVH2 680 aaPredicted RBP15.41■□□□□ 0.06
HMGB1-202ENST00000339872 NLGN2Q8NFZ4 835 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 GPKOWQ92917 476 aaPredicted RBP eCLIP15.41■□□□□ 0.06
HMGB1-202ENST00000339872 CSRNP1Q96S65 589 aa15.41■□□□□ 0.06
HMGB1-202ENST00000339872 ZNF70Q9UC06 446 aaPredicted RBP15.41■□□□□ 0.06
HMGB1-202ENST00000339872 TOB1P50616 345 aaPredicted RBP15.4■□□□□ 0.06
HMGB1-202ENST00000339872 NLRP5P59047 1200 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 RASSF7Q02833 373 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 PTPAQ15257 358 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 MRPS27Q92552 414 aaKnown RBP15.4■□□□□ 0.06
HMGB1-202ENST00000339872 SPZ1Q9BXG8 430 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 TNMDQ9H2S6 317 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 CLSTN2Q9H4D0 955 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 CABP5Q9NP86 173 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 A0A1W2PQ27 194 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 A0A1W2PQ64 194 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 A0A1W2PQD8 194 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 NPY5RQ15761 445 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 MAP3K11Q16584 847 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 SHROOM1Q2M3G4 852 aaPredicted RBP15.4■□□□□ 0.06
HMGB1-202ENST00000339872 SPDYE2Q495Y8 402 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 JMYQ8N9B5 988 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 VEZTQ9HBM0 779 aa15.4■□□□□ 0.06
HMGB1-202ENST00000339872 FRMPD2Q68DX3 1309 aaPredicted RBP15.4■□□□□ 0.06
HMGB1-202ENST00000339872 FAM205CA6NFA0 338 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 FAM160A1Q05DH4 1040 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 TATDN1Q6P1N9 297 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 PPP6R2O75170 966 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 ATP2B1P20020 1258 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 TNIP1Q15025 636 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 PPP4R3BQ5MIZ7 849 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms