RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TNIP1Q15025 636 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 SLC35G1Q2M3R5 365 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 KRT40Q6A162 431 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 TMTC3Q6ZXV5 915 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 CTCFLQ8NI51 663 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 GPT2Q8TD30 523 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 PIBF1Q8WXW3 757 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 ZBED3Q96IU2 234 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 TMEM39BQ9GZU3 492 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 EHD4Q9H223 541 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 DHX36Q9H2U1 1008 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 CPVLQ9H3G5 476 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 MYOZ2Q9NPC6 264 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 V9GY48 417 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 CNTNAP5Q8WYK1 1306 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 MYH8P13535 1937 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 IGKV6D-41A0A0C4DH26 115 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 MPHOSPH10O00566 681 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 GDF11O95390 407 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 POTEJP0CG39 1038 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 VEGFAP15692 232 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 YBX3P16989 372 aaKnown RBP eCLIP4.81□□□□□ -1.64
MCF2-201ENST00000338585 CEBPZQ03701 1054 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 PKN1Q16512 942 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 TBC1D10BQ4KMP7 808 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 SAMD7Q7Z3H4 446 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 MICALL2Q8IY33 904 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 LRRC47Q8N1G4 583 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 CSRNP1Q96S65 589 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 MTMR4Q9NYA4 1195 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 TMOD2Q9NZR1 351 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 PI4KBQ9UBF8 816 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 SWAP70Q9UH65 585 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 KCNJ14Q9UNX9 436 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 ATP6V1DQ9Y5K8 247 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 DDX49Q9Y6V7 483 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 ATRNL1Q5VV63 1379 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 PLIN4Q96Q06 1357 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 PDIA4P13667 645 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 NOVP48745 357 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 NT5C2P49902 561 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 ZNF280AP59817 542 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 KIF23Q02241 960 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 GRM4Q14833 912 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 CCDC178Q5BJE1 867 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 USP17L2Q6R6M4 530 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 TRIM22Q8IYM9 498 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 TMEM87AQ8NBN3 555 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 MTMR14Q8NCE2 650 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 FAM151AQ8WW52 585 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 ZSCAN16Q9H4T2 348 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 RBM28Q9NW13 759 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 VPS54Q9P1Q0 977 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 RBM27Q9P2N5 1060 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 CLIP2Q9UDT6 1046 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 MAD2L2Q9UI95 211 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 CNOT7Q9UIV1 285 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 USP17L5A8MUK1 530 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 CYTH3O43739 400 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 DEXIO95424 95 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 TOP1P11387 765 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 KRT85P78386 507 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 ATP2B2Q01814 1243 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 SEPT2Q15019 361 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 PPP2R5BQ15173 497 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 CERKLQ49MI3 558 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 TATDN1Q6P1N9 297 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 METTL16Q86W50 562 aaKnown RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 FOXP4Q8IVH2 680 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 OXER1Q8TDS5 423 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 USP28Q96RU2 1077 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 RNF26Q9BY78 433 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 TRIM34Q9BYJ4 488 aa4.8□□□□□ -1.64
MCF2-201ENST00000338585 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.8□□□□□ -1.64
MCF2-201ENST00000338585 MYH6P13533 1939 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 GREB1LQ9C091 1923 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 COL2A1P02458 1487 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 FRMPD2Q68DX3 1309 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 PALM3A6NDB9 673 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 BTBD18B2RXH4 712 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 KLRF2D3W0D1 207 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 ADAMTS3O15072 1205 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 PRPF3O43395 683 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 LMNB1P20700 586 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 RPS12P25398 132 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 KIF5BP33176 963 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 TRIM29Q14134 588 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 KLHL40Q2TBA0 621 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 SKOR2Q2VWA4 1001 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 CAVIN1Q6NZI2 390 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 MIGA2Q7L4E1 593 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 SIAH1Q8IUQ4 282 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 LEO1Q8WVC0 666 aaPredicted RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 UBA5Q9GZZ9 404 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 PGAP2Q9UHJ9 254 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 SSUH2Q9Y2M2 353 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 SBF1O95248 1867 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 MYH15Q9Y2K3 1946 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 MYO1BO43795 1136 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 TTLL1O95922 423 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms