RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 SERPINB13Q9UIV8 391 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 PCDHB6Q9Y5E3 794 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 PLIN4Q96Q06 1357 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 ADAMTS3O15072 1205 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 CYTH3O43739 400 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 SHMT1P34896 483 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 CACNB3P54284 484 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 CCDC93Q567U6 631 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 SHC4Q6S5L8 630 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 RASGRP2Q7LDG7 609 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 RTKN2Q8IZC4 609 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 CLIC6Q96NY7 704 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 SERPINA10Q9UK55 444 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 MTMR7Q9Y216 660 aa19.52■□□□□ 0.72
DDX41-201ENST00000330503 SLURP2P0DP57 97 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 NOM1Q5C9Z4 860 aaKnown RBP19.51■□□□□ 0.71
DDX41-201ENST00000330503 JMYQ8N9B5 988 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 MTMR4Q9NYA4 1195 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 FAM198AQ9UFP1 575 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 SWAP70Q9UH65 585 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 FAM237AA0A1B0GTK4 181 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 PFKFB1P16118 471 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 RBM5P52756 815 aaKnown RBP eCLIP19.51■□□□□ 0.71
DDX41-201ENST00000330503 PSMD1Q99460 953 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 IDI2Q9BXS1 227 aa19.51■□□□□ 0.71
DDX41-201ENST00000330503 CUTAO60888 179 aa19.5■□□□□ 0.71
DDX41-201ENST00000330503 GOLGA8HP0CJ92 632 aa19.5■□□□□ 0.71
DDX41-201ENST00000330503 RESP18Q5W5W9 173 aa19.5■□□□□ 0.71
DDX41-201ENST00000330503 SASS6Q6UVJ0 657 aa19.5■□□□□ 0.71
DDX41-201ENST00000330503 HPSEQ9Y251 543 aa19.5■□□□□ 0.71
DDX41-201ENST00000330503 ZNF202O95125 648 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 ANO6Q4KMQ2 910 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 SH3BP5LQ7L8J4 393 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 LZTS2Q9BRK4 669 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 MYO3BQ8WXR4 1341 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 KLRF2D3W0D1 207 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 ATP2B1P20020 1258 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 USP17L2Q6R6M4 530 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 EHD4Q9H223 541 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 SH3GLB2Q9NR46 395 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 FBXO2Q9UK22 296 aaPredicted RBP19.49■□□□□ 0.71
DDX41-201ENST00000330503 KIF13BQ9NQT8 1826 aa19.49■□□□□ 0.71
DDX41-201ENST00000330503 DDTLA6NHG4 134 aaPredicted RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 USP17L5A8MUK1 530 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 HLA-DOAP06340 250 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 NLRP5P59047 1200 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 TCP10Q12799 353 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 KRI1Q8N9T8 703 aaKnown RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 GPKOWQ92917 476 aaPredicted RBP eCLIP19.48■□□□□ 0.71
DDX41-201ENST00000330503 CPVLQ9H3G5 476 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 ZNF277Q9NRM2 450 aaPredicted RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 COL4A5P29400 1685 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 WNT7AO00755 349 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 NPM3O75607 178 aaKnown RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 ZBTB7AO95365 584 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 PARP1P09874 1014 aaKnown RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 PTPREP23469 700 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 GRIN1Q05586 938 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 CFAP100Q494V2 611 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 TYW1BQ6NUM6 668 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 FAM200AQ8TCP9 573 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 PRMT6Q96LA8 375 aaPredicted RBP19.48■□□□□ 0.71
DDX41-201ENST00000330503 DNAJC18Q9H819 358 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 BRMS1Q9HCU9 246 aa19.48■□□□□ 0.71
DDX41-201ENST00000330503 SIPA1L1O43166 1804 aa19.47■□□□□ 0.71
DDX41-201ENST00000330503 CLEC10AQ8IUN9 316 aa19.47■□□□□ 0.71
DDX41-201ENST00000330503 ERCC4Q92889 916 aaPredicted RBP19.47■□□□□ 0.71
DDX41-201ENST00000330503 SDF4Q9BRK5 362 aa19.47■□□□□ 0.71
DDX41-201ENST00000330503 SPZ1Q9BXG8 430 aa19.47■□□□□ 0.71
DDX41-201ENST00000330503 MYH8P13535 1937 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 TRIM75PA6NK02 468 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 DHX36Q9H2U1 1008 aaKnown RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 TDRD3Q9H7E2 651 aaKnown RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 CBX8Q9HC52 389 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 MORC2Q9Y6X9 1032 aaPredicted RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 PSME4Q14997 1843 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 AP5Z1O43299 807 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 VIL1P09327 827 aaKnown RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 WWC2Q6AWC2 1192 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 RSBN1LQ6PCB5 846 aaPredicted RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 CCDC125Q86Z20 511 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 LARGE2Q8N3Y3 721 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 GMLQ99445 158 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 DNAJC25Q9H1X3 360 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 CLIP2Q9UDT6 1046 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 USP25Q9UHP3 1055 aa19.46■□□□□ 0.71
DDX41-201ENST00000330503 ATF5Q9Y2D1 282 aaPredicted RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 SRPRBQ9Y5M8 271 aaKnown RBP19.46■□□□□ 0.71
DDX41-201ENST00000330503 RAD17O75943 681 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 SMARCA1P28370 1054 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 SYKP43405 635 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 TIGD1Q96MW7 591 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 A0A087WWV3 80 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 STXBP3O00186 592 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 PSMD14O00487 310 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 PDHBP11177 359 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 CALML3P27482 149 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 EIF6P56537 245 aaKnown RBP19.45■□□□□ 0.7
DDX41-201ENST00000330503 SPECC1Q5M775 1068 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms