RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 ADAMTS3O15072 1205 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 TOM1O60784 492 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 SEC31AO94979 1220 aaKnown RBP15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 ERCC5P28715 1186 aaPredicted RBP15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 NR1I3Q14994 352 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 PPP2R5BQ15173 497 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 FILIP1LQ4L180 1135 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 TMCO3Q6UWJ1 677 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 MTA3Q9BTC8 594 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 VPS16Q9H269 839 aa15.95■□□□□ 0.14
ATP2C1-201ENST00000328560 ARGLU1Q9NWB6 273 aaPredicted RBP15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 A0A0U1RQJ8 604 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 CALM1P0DP23 149 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 CALM2P0DP24 149 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 CALM3P0DP25 149 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 RCAN1P53805 252 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 ATRIPQ8WXE1 791 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 FERMT2Q96AC1 680 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 BRIP1Q9BX63 1249 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 MRPL44Q9H9J2 332 aaKnown RBP15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 ZNF804BA4D1E1 1349 aa15.94■□□□□ 0.14
ATP2C1-201ENST00000328560 HIBADHP31937 336 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 BMS1Q14692 1282 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 NSUN4Q96CB9 384 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 DCP1AQ9NPI6 582 aaPredicted RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 SRP68Q9UHB9 627 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 N4BP3O15049 544 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 USP17L8P0C7I0 530 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 RPS8P62241 208 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 TBC1D9BQ66K14 1250 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 FCHSD1Q86WN1 690 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 ELOA2Q8IYF1 753 aaPredicted RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 NYXQ9GZU5 481 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 COL1A1P02452 1464 aaPredicted RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 SCG2P13521 617 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 DZIP1Q86YF9 867 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 IQUBQ8NA54 791 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 SPATA31A5Q5VU36 1347 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 SPATA31A7Q8IWB4 1347 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 STRCQ7RTU9 1775 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 NID2Q14112 1375 aa15.93■□□□□ 0.14
ATP2C1-201ENST00000328560 A0A1B0GTH6 734 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 CCDC175P0C221 793 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 H2AFXP16104 143 aaPredicted RBP15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 CASP14P31944 242 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 PPP2R3AQ06190 1150 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 CUL4BQ13620 913 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 TPTE2Q6XPS3 522 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 GNPATO15228 680 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 TADA3O75528 432 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 DPYDQ12882 1025 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 TAB2Q9NYJ8 693 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 ERICH4A6NGS2 130 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 TXNRD3Q86VQ6 643 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 LINC00116Q8NCU8 138 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 SPATA20Q8TB22 786 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 DYNLL2Q96FJ2 89 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 KAT14Q9H8E8 782 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 CNTNAP5Q8WYK1 1306 aa15.92■□□□□ 0.14
ATP2C1-201ENST00000328560 GOLGA6L9A6NEM1 432 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 POLR3GO15318 223 aaPredicted RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 BMP15O95972 392 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 USP5P45974 858 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 TFAP4Q01664 338 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 RAD9BQ6WBX8 426 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 EEF2KMTQ96G04 330 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 GSDMAQ96QA5 445 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 SRRTQ9BXP5 876 aaKnown RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 PPP1R3GB7ZBB8 358 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 DDAH1O94760 285 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 NPY5RQ15761 445 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 SLC51AQ86UW1 340 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 PUF60Q9UHX1 559 aaKnown RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 TPM1P09493 284 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 XDHP47989 1333 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 DDX60Q8IY21 1712 aaKnown RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 ABCA3Q99758 1704 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 NOL10Q9BSC4 688 aaKnown RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 MKNK2Q9HBH9 465 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 ADD3Q9UEY8 706 aaKnown RBP15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 MYH2Q9UKX2 1941 aa15.91■□□□□ 0.14
ATP2C1-201ENST00000328560 ATP2C1P98194 919 aaPredicted RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 SF3B3Q15393 1217 aaKnown RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 BARGINQ6ZT62 677 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 STAG2Q8N3U4 1231 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 NUP88Q99567 741 aaPredicted RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 GDAQ9Y2T3 454 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 RTCBQ9Y3I0 505 aaKnown RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 COL14A1Q05707 1796 aaKnown RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 PNMA6AP0CW24 399 aaPredicted RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 GABPB1Q06547 395 aaPredicted RBP15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 ZNF569Q5MCW4 686 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 ANKIB1Q9P2G1 1089 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 STX8Q9UNK0 236 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 ANKRD36CQ5JPF3 1778 aa15.9■□□□□ 0.14
ATP2C1-201ENST00000328560 EFCAB8A8MWE9 144 aa15.89■□□□□ 0.13
ATP2C1-201ENST00000328560 FXR1P51114 621 aaKnown RBP eCLIP15.89■□□□□ 0.13
ATP2C1-201ENST00000328560 PTF1AQ7RTS3 328 aa15.89■□□□□ 0.13
ATP2C1-201ENST00000328560 SH3RF1Q7Z6J0 888 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms