RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 PLEKHA8P1O95397 391 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 FMR1Q06787 632 aaKnown RBP eCLIP18.34■□□□□ 0.53
USHBP1-202ENST00000324554 TROAPQ12815 778 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 MORC3Q14149 939 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 EARS2Q5JPH6 523 aaKnown RBP18.34■□□□□ 0.53
USHBP1-202ENST00000324554 CTR9Q6PD62 1173 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 GRAMD1CQ8IYS0 662 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 RPGRQ92834 1020 aaKnown RBP18.34■□□□□ 0.53
USHBP1-202ENST00000324554 SMARCE1Q969G3 411 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 IQCA1Q86XH1 822 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 MLKLQ8NB16 471 aa18.34■□□□□ 0.53
USHBP1-202ENST00000324554 NOL10Q9BSC4 688 aaKnown RBP18.34■□□□□ 0.53
USHBP1-202ENST00000324554 RBM28Q9NW13 759 aaKnown RBP18.34■□□□□ 0.53
USHBP1-202ENST00000324554 PCP11498 1178 aaKnown RBP18.33■□□□□ 0.53
USHBP1-202ENST00000324554 H2AFXP16104 143 aaPredicted RBP18.33■□□□□ 0.53
USHBP1-202ENST00000324554 KRT2P35908 639 aa18.33■□□□□ 0.53
USHBP1-202ENST00000324554 V9GY48 417 aaPredicted RBP18.33■□□□□ 0.53
USHBP1-202ENST00000324554 PHLPP2Q6ZVD8 1323 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 TRIM75PA6NK02 468 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 POLRMTO00411 1230 aaKnown RBP18.33■□□□□ 0.52
USHBP1-202ENST00000324554 TUBB4AP04350 444 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 ST5P78524 1137 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 KANK3Q6NY19 840 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 FBXO33Q7Z6M2 555 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 KRT222Q8N1A0 295 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 TRIML1Q8N9V2 468 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 SPATA20Q8TB22 786 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 NSUN4Q96CB9 384 aaKnown RBP18.33■□□□□ 0.52
USHBP1-202ENST00000324554 DACH1Q9UI36 760 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 NFE2L3Q9Y4A8 694 aa18.33■□□□□ 0.52
USHBP1-202ENST00000324554 DLEC1Q9Y238 1755 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 USP17L12C9JPN9 530 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 USP17L21D6R901 530 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 ZNF18P17022 549 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 GRAPQ13588 217 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 GRAPLQ8TC17 118 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-202ENST00000324554 MED15Q96RN5 788 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 AATFQ9NY61 560 aaKnown RBP eCLIP18.32■□□□□ 0.52
USHBP1-202ENST00000324554 SEMA3EO15041 775 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 PLSCR1O15162 318 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 CCP110O43303 1012 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 CALM1P0DP23 149 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 CALM2P0DP24 149 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 CALM3P0DP25 149 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 EVX2Q03828 476 aa18.32■□□□□ 0.52
USHBP1-202ENST00000324554 TBX2Q13207 712 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-202ENST00000324554 TRMT44Q8IYL2 757 aaKnown RBP18.32■□□□□ 0.52
USHBP1-202ENST00000324554 ENOX1Q8TC92 643 aaKnown RBP18.32■□□□□ 0.52
USHBP1-202ENST00000324554 A0A087X0B3 334 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 DDAH1O94760 285 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 KIF20AO95235 890 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 HIBADHP31937 336 aaKnown RBP18.31■□□□□ 0.52
USHBP1-202ENST00000324554 MECOMQ03112 1051 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 GABPB1Q06547 395 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-202ENST00000324554 TMTC3Q6ZXV5 915 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.31■□□□□ 0.52
USHBP1-202ENST00000324554 VWA3AA6NCI4 1184 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 WNT7AO00755 349 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 NPY5RQ15761 445 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 AKT1S1Q96B36 256 aa18.31■□□□□ 0.52
USHBP1-202ENST00000324554 SLFN14P0C7P3 912 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 TNFRSF25Q93038 417 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 DHX58Q96C10 678 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 EPSTI1Q96J88 318 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 ANKRD2Q9GZV1 360 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 PPP2R2CQ9Y2T4 447 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 ARHGAP6O43182 974 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 ARHGAP29Q52LW3 1261 aa18.3■□□□□ 0.52
USHBP1-202ENST00000324554 DCP1AQ9NPI6 582 aaPredicted RBP18.3■□□□□ 0.52
USHBP1-202ENST00000324554 CNTNAP5Q8WYK1 1306 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 ORC4O43929 436 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 NMT2O60551 498 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 CLCN6P51797 869 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 NOM1Q5C9Z4 860 aaKnown RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 FCHSD1Q86WN1 690 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 TC2NQ8N9U0 490 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 ST7Q9NRC1 585 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 PARP3Q9Y6F1 533 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 PDS5AQ29RF7 1337 aaKnown RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 URI1O94763 535 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 PLCD1P51178 756 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 ADKP55263 362 aaKnown RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 GPSM2P81274 684 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 EN1Q05925 392 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 FAM177A1Q8N128 213 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 SYMPKQ92797 1274 aaKnown RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 BAG1Q99933 345 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 BRMS1Q9HCU9 246 aa18.29■□□□□ 0.52
USHBP1-202ENST00000324554 SAMSN1Q9NSI8 373 aaKnown RBP18.29■□□□□ 0.52
USHBP1-202ENST00000324554 CDK11BP21127 795 aaKnown RBP18.28■□□□□ 0.52
USHBP1-202ENST00000324554 PRDX5P30044 214 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 SRBD1Q8N5C6 995 aaKnown RBP18.28■□□□□ 0.52
USHBP1-202ENST00000324554 FERMT2Q96AC1 680 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 MYH13Q9UKX3 1938 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 BMP15O95972 392 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 ERCC5P28715 1186 aaPredicted RBP18.28■□□□□ 0.52
USHBP1-202ENST00000324554 EZH2Q15910 746 aaKnown RBP18.28■□□□□ 0.52
USHBP1-202ENST00000324554 SPECC1LQ69YQ0 1117 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 TOGARAM2Q6ZUX3 1019 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 SH3RF1Q7Z6J0 888 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms