RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CNSTQ6PJW8 725 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 MAML1Q92585 1016 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 SAAL1Q96ER3 474 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 RPAP3Q9H6T3 665 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 IFT122Q9HBG6 1241 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 EMC3Q9P0I2 261 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 ATPIF1Q9UII2 106 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 MAP3K7O43318 606 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 COPB2P35606 906 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 KIF11P52732 1056 aa8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 KARSQ15046 597 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-201ENST00000313860 RGSL1A5PLK6 1076 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CCT6AP40227 531 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 SGO2Q562F6 1265 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 PPP4R1Q8TF05 950 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF428Q96B54 188 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TBATAQ96M53 351 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TEX12Q9BXU0 123 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TRIM31Q9BZY9 425 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 RGS5O15539 181 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 GOLGA8HP0CJ92 632 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 ATP1A2P50993 1020 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 STAT2P52630 851 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 DSTYKQ6XUX3 929 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 C4orf50Q6ZRC1 276 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 FGD2Q7Z6J4 655 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 GPR161Q8N6U8 529 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 UBL4BQ8N7F7 174 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 PRIMPOLQ96LW4 560 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 EIF3CQ99613 913 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 ZCWPW1Q9H0M4 648 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 KIF21BO75037 1637 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT16P08779 473 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 ATF3P18847 181 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 S100A1P23297 94 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CTNNA1P35221 906 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 VAV2P52735 878 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 VEPH1Q14D04 833 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 STX1AQ16623 288 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 SZRD1Q7Z422 152 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 NME9Q86XW9 330 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 IFNLR1Q8IU57 520 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 SPATA18Q8TC71 538 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TSC1Q92574 1164 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CCDC74AQ96AQ1 378 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 SCYL1Q96KG9 808 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 C10orf88Q9H8K7 445 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TTLL3Q9Y4R7 772 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CEP164Q9UPV0 1460 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 A0A087WUV0 522 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 STX6O43752 255 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 MFN2O95140 757 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 HARSP12081 509 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 IMPDH2P12268 514 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 PSMC3P17980 439 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 ABCD1P33897 745 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT2P35908 639 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CFAP70Q5T0N1 1121 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 KAZNQ674X7 775 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 LRRC49Q8IUZ0 686 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CNGA4Q8IV77 575 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 TTC5Q8N0Z6 440 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CCSER2Q9H7U1 834 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 RRBP1Q9P2E9 1410 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 CECR2Q9BXF3 1484 aa8.38□□□□□ -1.07
LIMCH1-201ENST00000313860 PEX1O43933 1283 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 UFL1O94874 794 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 MAGEA9P43362 315 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 GPR1P46091 355 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 TRAP1Q12931 704 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT71Q3SY84 523 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 NCAPG2Q86XI2 1143 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 MICALL2Q8IY33 904 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 SECISBP2LQ93073 1101 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 C8orf4Q9NR00 106 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 ABCF3Q9NUQ8 709 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 TMOD3Q9NYL9 352 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 KIAA1468Q9P260 1216 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 GSNP06396 782 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 PSMC6P62333 389 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 C16orf62Q7Z3J2 963 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 RNF169Q8NCN4 708 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 SKA2Q8WVK7 121 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 CASP10Q92851 521 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 RNF34Q969K3 372 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 CAAP1Q9H8G2 361 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 ZSCAN9O15535 394 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT37O76014 449 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 APOA4P06727 396 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 RWDD2BP57060 319 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 GSDMDP57764 484 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 TTC39AQ5SRH9 613 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 ROGDIQ9GZN7 287 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 KLC2Q9H0B6 622 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 RANBP17Q9H2T7 1088 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 PDHA1P08559 390 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 SAT1P21673 171 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 ADCY7P51828 1080 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 OSCP1Q8WVF1 389 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms