RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 CABP5Q9NP86 173 aa25.86■■□□□ 1.73
PDLIM2-202ENST00000308354 ZNF646O15015 1829 aaPredicted RBP25.86■■□□□ 1.73
PDLIM2-202ENST00000308354 SLC35G1Q2M3R5 365 aa25.86■■□□□ 1.73
PDLIM2-202ENST00000308354 MRPS27Q92552 414 aaKnown RBP25.86■■□□□ 1.73
PDLIM2-202ENST00000308354 FAM196BA6NMK8 535 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 ADCY5O95622 1261 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 SCG2P13521 617 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 ENGASEQ8NFI3 743 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 FAM200AQ8TCP9 573 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 TDRD3Q9H7E2 651 aaKnown RBP25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 FAM198AQ9UFP1 575 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 SERPINA10Q9UK55 444 aa25.85■■□□□ 1.73
PDLIM2-202ENST00000308354 SHMT1P34896 483 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 HDLBPQ00341 1268 aaKnown RBP25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 FAM160A1Q05DH4 1040 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 ANO6Q4KMQ2 910 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 EARS2Q5JPH6 523 aaKnown RBP25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 AXDND1Q5T1B0 1012 aaPredicted RBP25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 PSMD1Q99460 953 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 CCDC39Q9UFE4 941 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 NOL7Q9UMY1 257 aaKnown RBP25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 UTRNP46939 3433 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 DDTLA6NHG4 134 aaPredicted RBP25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 HLA-DOAP06340 250 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 NDUFA8P51970 172 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 USP17L2Q6R6M4 530 aa25.84■■□□□ 1.73
PDLIM2-202ENST00000308354 CYTH3O43739 400 aa25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 KRT2P35908 639 aa25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 PFKFB3Q16875 520 aaPredicted RBP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 CFAP100Q494V2 611 aa25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 NOM1Q5C9Z4 860 aaKnown RBP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 ZSCAN29Q8IWY8 852 aaPredicted RBP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 GPKOWQ92917 476 aaPredicted RBP eCLIP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 PRMT6Q96LA8 375 aaPredicted RBP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 COL4A5P29400 1685 aa25.83■■□□□ 1.73
PDLIM2-202ENST00000308354 A0A1W2PQ27 194 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 A0A1W2PQ64 194 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 A0A1W2PQD8 194 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 MSNP26038 577 aaKnown RBP25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 PLCB2Q00722 1185 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 NPY5RQ15761 445 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 SASS6Q6UVJ0 657 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 CLIC6Q96NY7 704 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 ZBTB12Q9Y330 459 aaPredicted RBP25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 PCDHB6Q9Y5E3 794 aa25.83■■□□□ 1.72
PDLIM2-202ENST00000308354 PALM3A6NDB9 673 aaPredicted RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 PSMD14O00487 310 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 ADAMTS3O15072 1205 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 TOP1P11387 765 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 R3HDM1Q15032 1099 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 CCDC125Q86Z20 511 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 MTMR4Q9NYA4 1195 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 PIM2Q9P1W9 311 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 AP5Z1O43299 807 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 KINO60870 393 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 PTMAP06454 111 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 SH3BP5LQ7L8J4 393 aa25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 FMR1NBQ8N0W7 255 aaPredicted RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 LRRC47Q8N1G4 583 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-202ENST00000308354 KLRF2D3W0D1 207 aa25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 MPHOSPH10O00566 681 aaKnown RBP25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 RILPL1Q5EBL4 403 aa25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 LUZP1Q86V48 1076 aa25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 DNAJC18Q9H819 358 aa25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 SWAP70Q9UH65 585 aa25.81■■□□□ 1.72
PDLIM2-202ENST00000308354 POLD1P28340 1107 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 NLRP5P59047 1200 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 GRIPAP1Q4V328 841 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 ERCC4Q92889 916 aaPredicted RBP25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 IDI2Q9BXS1 227 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 USP17L5A8MUK1 530 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 GNAQP50148 359 aa25.8■■□□□ 1.72
PDLIM2-202ENST00000308354 PPP6R2O75170 966 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 PARP1P09874 1014 aaKnown RBP25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 SHROOM1Q2M3G4 852 aaPredicted RBP25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 RSBN1LQ6PCB5 846 aaPredicted RBP25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 MTFR1LQ9H019 292 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 CBX8Q9HC52 389 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 CLIP2Q9UDT6 1046 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 NOVP48745 357 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 DNAJC25Q9H1X3 360 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 ZKSCAN5Q9Y2L8 839 aa25.79■■□□□ 1.72
PDLIM2-202ENST00000308354 CTAGE5O15320 804 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 TGFB2P61812 414 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 TYW1BQ6NUM6 668 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 SHC4Q6S5L8 630 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 BRMS1Q9HCU9 246 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 PLIN4Q96Q06 1357 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 IGKV6D-41A0A0C4DH26 115 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 PFKFB1P16118 471 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 CMA1P23946 247 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 ATP2B2Q01814 1243 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 JMYQ8N9B5 988 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 VAT1LQ9HCJ6 419 aa25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.78■■□□□ 1.72
PDLIM2-202ENST00000308354 FRMPD2Q68DX3 1309 aaPredicted RBP25.77■■□□□ 1.72
PDLIM2-202ENST00000308354 WNT7AO00755 349 aa25.77■■□□□ 1.72
PDLIM2-202ENST00000308354 SPECC1Q5M775 1068 aa25.77■■□□□ 1.72
PDLIM2-202ENST00000308354 TNFRSF25Q93038 417 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms