RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 KIF5BP33176 963 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 AKAP17AQ02040 695 aaKnown RBP13.74□□□□□ -0.21
TRIM40-205ENST00000307859 CEBPZQ03701 1054 aaKnown RBP13.74□□□□□ -0.21
TRIM40-205ENST00000307859 GRM4Q14833 912 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 SOGA3Q5TF21 947 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 CCDC82Q8N4S0 544 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 LINC00301Q8NCQ3 95 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.74□□□□□ -0.21
TRIM40-205ENST00000307859 COL2A1P02458 1487 aaPredicted RBP13.73□□□□□ -0.21
TRIM40-205ENST00000307859 SRBD1Q8N5C6 995 aaKnown RBP13.73□□□□□ -0.21
TRIM40-205ENST00000307859 IDI2Q9BXS1 227 aa13.73□□□□□ -0.21
TRIM40-205ENST00000307859 EHD4Q9H223 541 aa13.73□□□□□ -0.21
TRIM40-205ENST00000307859 FOXP1Q9H334 677 aaPredicted RBP13.73□□□□□ -0.21
TRIM40-205ENST00000307859 SWAP70Q9UH65 585 aa13.73□□□□□ -0.21
TRIM40-205ENST00000307859 CLIC4Q9Y696 253 aa13.73□□□□□ -0.21
TRIM40-205ENST00000307859 IQCA1LA6NCM1 817 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 POTEIP0CG38 1075 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 POTEJP0CG39 1038 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 NFIAQ12857 509 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 SAFBQ15424 915 aaKnown RBP eCLIP13.72□□□□□ -0.21
TRIM40-205ENST00000307859 DEFB115Q30KQ5 88 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 ANO1Q5XXA6 986 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 BICD2Q8TD16 824 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 KCNG4Q8TDN1 519 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 SHISA4Q96DD7 197 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 TMEM47Q9BQJ4 181 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 DDX19AQ9NUU7 478 aaKnown RBP13.72□□□□□ -0.21
TRIM40-205ENST00000307859 SERPINB13Q9UIV8 391 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 TAOK2Q9UL54 1235 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 IGKV6D-41A0A0C4DH26 115 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 ITGBL1O95965 494 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-205ENST00000307859 XBP1P17861 261 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 GNAQP50148 359 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 TPRNQ4KMQ1 711 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 NOSTRINQ8IVI9 506 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 DIS3L2Q8IYB7 885 aaKnown RBP13.72□□□□□ -0.21
TRIM40-205ENST00000307859 PHF20Q9BVI0 1012 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 RBSNQ9H1K0 784 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 KCNJ14Q9UNX9 436 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 PCDHAC2Q9Y5I4 1007 aa13.72□□□□□ -0.21
TRIM40-205ENST00000307859 V9GY48 417 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-205ENST00000307859 HLA-DOAP06340 250 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 VIL1P09327 827 aaKnown RBP13.71□□□□□ -0.22
TRIM40-205ENST00000307859 GNL2Q13823 731 aaKnown RBP13.71□□□□□ -0.22
TRIM40-205ENST00000307859 STK38Q15208 465 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 ADALQ6DHV7 355 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 RSBN1LQ6PCB5 846 aaPredicted RBP13.71□□□□□ -0.22
TRIM40-205ENST00000307859 LARGE2Q8N3Y3 721 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 CEP95Q96GE4 821 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 PANK2Q9BZ23 570 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 NUP62CLQ9H1M0 184 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 DHX36Q9H2U1 1008 aaKnown RBP13.71□□□□□ -0.22
TRIM40-205ENST00000307859 TSPY26PQ9H489 355 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 ZNF277Q9NRM2 450 aaPredicted RBP13.71□□□□□ -0.22
TRIM40-205ENST00000307859 DACT1Q9NYF0 836 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 FAM198AQ9UFP1 575 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 MAD2L2Q9UI95 211 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 STX8Q9UNK0 236 aa13.71□□□□□ -0.22
TRIM40-205ENST00000307859 LTBP3Q9NS15 1303 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 ATRNL1Q5VV63 1379 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 A0A1W2PQ27 194 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 A0A1W2PQ64 194 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 A0A1W2PQD8 194 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 PALM3A6NDB9 673 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-205ENST00000307859 BTBD18B2RXH4 712 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 SPTLC2O15270 562 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 TOP1P11387 765 aaKnown RBP13.7□□□□□ -0.22
TRIM40-205ENST00000307859 SCG2P13521 617 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 SHMT1P34896 483 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 ME1P48163 572 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 SLC39A14Q15043 492 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 PTPAQ15257 358 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-205ENST00000307859 RBM43Q6ZSC3 357 aaKnown RBP13.7□□□□□ -0.22
TRIM40-205ENST00000307859 L3MBTL3Q96JM7 780 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-205ENST00000307859 GMLQ99445 158 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 FUCA2Q9BTY2 467 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 CLSTN2Q9H4D0 955 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 VPS54Q9P1Q0 977 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 PCDHA7Q9UN72 937 aa13.7□□□□□ -0.22
TRIM40-205ENST00000307859 NR1I2O75469 434 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 AKR1B1P15121 316 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 RBM5P52756 815 aaKnown RBP eCLIP13.69□□□□□ -0.22
TRIM40-205ENST00000307859 CFAP100Q494V2 611 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 ZFPM1Q8IX07 1006 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 CCAR1Q8IX12 1150 aaKnown RBP13.69□□□□□ -0.22
TRIM40-205ENST00000307859 STAG2Q8N3U4 1231 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 LZTS2Q9BRK4 669 aa13.69□□□□□ -0.22
TRIM40-205ENST00000307859 hCG_1642624A0A1W2PR95 340 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 PSMD14O00487 310 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 PPP6R2O75170 966 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 ENTPD3O75355 529 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 SF3A1Q15459 793 aaKnown RBP13.68□□□□□ -0.22
TRIM40-205ENST00000307859 NPY5RQ15761 445 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 RILPL1Q5EBL4 403 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 ENGASEQ8NFI3 743 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 BEGAINQ9BUH8 593 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 GOLPH3LQ9H4A5 285 aa13.68□□□□□ -0.22
TRIM40-205ENST00000307859 TAF1DQ9H5J8 278 aaPredicted RBP13.68□□□□□ -0.22
TRIM40-205ENST00000307859 MTMR4Q9NYA4 1195 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms