RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ZWINTO95229 277 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 IRX5P78411 483 aaPredicted RBP19.19■□□□□ 0.66
SYNPO-201ENST00000307662 TRIM68Q6AZZ1 485 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 ZNF790Q6PG37 636 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 PCDHA7Q9UN72 937 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 STK24Q9Y6E0 443 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 LUC7L3O95232 432 aaKnown RBP19.19■□□□□ 0.66
SYNPO-201ENST00000307662 NLRC4Q9NPP4 1024 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 PHLPP2Q6ZVD8 1323 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 DNM2P50570 870 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 PTH1RQ03431 593 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 PPP2R5EQ16537 467 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 DDB1Q16531 1140 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 ACSBG1Q96GR2 724 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 ANKRD2Q9GZV1 360 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 FAM135BQ49AJ0 1406 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 KCNK3O14649 394 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 PUM3Q15397 648 aaKnown RBP19.18■□□□□ 0.66
SYNPO-201ENST00000307662 RPAINQ86UA6 219 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 CHAMP1Q96JM3 812 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 SPATA31E1Q6ZUB1 1445 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 KRIT1O00522 736 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 GNA14O95837 355 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 ERCC3P19447 782 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 CTDSPL2Q05D32 466 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 ANTXR1Q9H6X2 564 aa19.18■□□□□ 0.66
SYNPO-201ENST00000307662 GAS8O95995 478 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 SNX16P57768 344 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 LRCH2Q5VUJ6 765 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 NYXQ9GZU5 481 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 BCRP11274 1271 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 ATP5JP18859 108 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 GBP7Q8N8V2 638 aaPredicted RBP19.17■□□□□ 0.66
SYNPO-201ENST00000307662 P3H4Q92791 437 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 NDUFA8P51970 172 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 AP1ARQ63HQ0 302 aa19.17■□□□□ 0.66
SYNPO-201ENST00000307662 TBC1D8O95759 1140 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 RFC1P35251 1148 aaPredicted RBP19.16■□□□□ 0.66
SYNPO-201ENST00000307662 SPATA1Q5VX52 437 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 NOSTRINQ8IVI9 506 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 KIFC2Q96AC6 838 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 LSM14BQ9BX40 385 aaKnown RBP19.16■□□□□ 0.66
SYNPO-201ENST00000307662 NDUFB9Q9Y6M9 179 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 SMTNP53814 917 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 MAP7Q14244 749 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 GLT8D2Q9H1C3 349 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 VPS37BQ9H9H4 285 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 USH1CQ9Y6N9 552 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 ITGA6P23229 1130 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 NELFCDQ8IXH7 590 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 KIAA0232Q92628 1395 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 CLTAP09496 248 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 GPCPD1Q9NPB8 672 aa19.16■□□□□ 0.66
SYNPO-201ENST00000307662 TTLL12Q14166 644 aaPredicted RBP19.15■□□□□ 0.66
SYNPO-201ENST00000307662 TBC1D7Q9P0N9 293 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 EXOC7Q9UPT5 735 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 TRPC3Q13507 836 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 PSMD6Q15008 389 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 TBC1D31Q96DN5 1066 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 VPS54Q9P1Q0 977 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 EPN1Q9Y6I3 576 aaPredicted RBP19.15■□□□□ 0.66
SYNPO-201ENST00000307662 GCC2Q8IWJ2 1684 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 IRX4P78413 519 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 RASA3Q14644 834 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 GEN1Q17RS7 908 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 STAG1Q8WVM7 1258 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 BCAP29Q9UHQ4 241 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 ABCA5Q8WWZ7 1642 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 A0A087WUV0 522 aaPredicted RBP19.15■□□□□ 0.66
SYNPO-201ENST00000307662 H7C1D1 291 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 CALCRLQ16602 461 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 AFAP1L2Q8N4X5 818 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 CACTINQ8WUQ7 758 aaKnown RBP19.15■□□□□ 0.66
SYNPO-201ENST00000307662 A0A1W2PQ27 194 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 A0A1W2PQ64 194 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 A0A1W2PQD8 194 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 PRDM1O75626 825 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 SH2D4BQ5SQS7 431 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 CCT6BQ92526 530 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 EXOC4Q96A65 974 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 VEZTQ9HBM0 779 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 MYO1AQ9UBC5 1043 aa19.15■□□□□ 0.66
SYNPO-201ENST00000307662 ZNF622Q969S3 477 aaKnown RBP eCLIP19.14■□□□□ 0.66
SYNPO-201ENST00000307662 BUB1O43683 1085 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 U2AF1L4Q8WU68 220 aaKnown RBP19.14■□□□□ 0.65
SYNPO-201ENST00000307662 FAN1Q9Y2M0 1017 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 CHMP2AO43633 222 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 ADCY7P51828 1080 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 ZNF827Q17R98 1081 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 TTC19Q6DKK2 380 aaPredicted RBP19.14■□□□□ 0.65
SYNPO-201ENST00000307662 TPTE2Q6XPS3 522 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 EPSTI1Q96J88 318 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 RABGAP1Q9Y3P9 1069 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 MAP3K21Q5TCX8 1036 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 RILPQ96NA2 401 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 DNM3Q9UQ16 869 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 USTQ9Y2C2 406 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 PLXNC1O60486 1568 aa19.14■□□□□ 0.65
SYNPO-201ENST00000307662 PBRM1Q86U86 1689 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 CRCPO75575 148 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms