RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 Q9H521 79 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 ANKRD26Q9UPS8 1709 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 IL17REQ8NFR9 667 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 FAF1Q9UNN5 650 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-201ENST00000295550 NR1I2O75469 434 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 STAG1Q8WVM7 1258 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 KIFAP3Q92845 792 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 PAK2Q13177 524 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 RSPH3Q86UC2 560 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 HVCN1Q96D96 273 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 C6orf50Q9HD87 102 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 CNGA1P29973 690 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 SNCBQ16143 134 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 MGARPQ8TDB4 240 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 BAIAP2L1Q9UHR4 511 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 STX8Q9UNK0 236 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 POSTNQ15063 836 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 PHLDB3Q6NSJ2 640 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 BCL2L12Q9HB09 334 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 ZMYM6O95789 1325 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 MROH5Q6ZUA9 1318 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 PXDNLA1KZ92 1463 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 SMIM24O75264 130 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 PLCG2P16885 1265 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 RRP36Q96EU6 259 aaKnown RBP10.92□□□□□ -0.66
COL6A3-201ENST00000295550 HIP1RO75146 1068 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 ITGA6P23229 1130 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 PPP1R2P41236 205 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 PPP1R21Q6ZMI0 780 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 DZIP3Q86Y13 1208 aaKnown RBP10.92□□□□□ -0.66
COL6A3-201ENST00000295550 CABS1Q96KC9 395 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 ROBO2Q9HCK4 1378 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 RXRAP19793 462 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 GIPC1O14908 333 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 GNA11P29992 359 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 VWA3BQ502W6 1294 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 TDRD7Q8NHU6 1098 aaKnown RBP10.92□□□□□ -0.66
COL6A3-201ENST00000295550 TRIM31Q9BZY9 425 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 BCAP29Q9UHQ4 241 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 DIP2CQ9Y2E4 1556 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 CROCCP2Q86T23 111 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 VWA3AA6NCI4 1184 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 CUL4BQ13620 913 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 CLEC17AQ6ZS10 378 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 SMARCC2Q8TAQ2 1214 aa10.92□□□□□ -0.66
COL6A3-201ENST00000295550 B4E1Z4 1266 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 NYXQ9GZU5 481 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 FAM204AQ9H8W3 233 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 PLCD1P51178 756 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 POLA2Q14181 598 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 FAM173BQ6P4H8 233 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 ANKRD2Q9GZV1 360 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 SPATS2LQ9NUQ6 558 aaKnown RBP10.91□□□□□ -0.66
COL6A3-201ENST00000295550 ERBB4Q15303 1308 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 A0A1W2PQ27 194 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 A0A1W2PQ64 194 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 A0A1W2PQD8 194 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 EPB41P11171 864 aaKnown RBP10.91□□□□□ -0.66
COL6A3-201ENST00000295550 SH3TC1Q8TE82 1336 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 KRT40Q6A162 431 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 HS2ST1Q7LGA3 356 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 MAP4K1Q92918 833 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-201ENST00000295550 MIGA1Q8NAN2 632 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 ZMAT2Q96NC0 199 aaKnown RBP10.91□□□□□ -0.66
COL6A3-201ENST00000295550 PIK3C2BO00750 1634 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 PTPRMP28827 1452 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 MED23Q9ULK4 1368 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 ARHGAP42A6NI28 874 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 CARMIL3Q8ND23 1372 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 CCDC89Q8N998 374 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 PPP4R1Q8TF05 950 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 KIAA1468Q9P260 1216 aa10.91□□□□□ -0.66
COL6A3-201ENST00000295550 LONRF3Q496Y0 759 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 ASIC3Q9UHC3 531 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 ARHGEF40Q8TER5 1519 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 HMGB1P1B2RPK0 211 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-201ENST00000295550 AKNAD1Q5T1N1 836 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 MYSM1Q5VVJ2 828 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 XPO4Q9C0E2 1151 aaKnown RBP10.9□□□□□ -0.66
COL6A3-201ENST00000295550 CABP5Q9NP86 173 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 KRT71Q3SY84 523 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 THEGQ9P2T0 379 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 EAF2Q96CJ1 260 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-201ENST00000295550 FAM212AQ96EL1 285 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 TCHHQ07283 1943 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 POLR2DO15514 142 aaKnown RBP10.9□□□□□ -0.66
COL6A3-201ENST00000295550 DTHD1Q6ZMT9 781 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 PDCD7Q8N8D1 485 aaKnown RBP10.9□□□□□ -0.66
COL6A3-201ENST00000295550 IQCDQ96DY2 449 aa10.9□□□□□ -0.66
COL6A3-201ENST00000295550 PFKFB1P16118 471 aa10.9□□□□□ -0.67
COL6A3-201ENST00000295550 PAK1Q13153 545 aa10.9□□□□□ -0.67
COL6A3-201ENST00000295550 AEBP2Q6ZN18 517 aaPredicted RBP10.9□□□□□ -0.67
COL6A3-201ENST00000295550 ST5P78524 1137 aa10.9□□□□□ -0.67
COL6A3-201ENST00000295550 LCA5Q86VQ0 697 aa10.9□□□□□ -0.67
COL6A3-201ENST00000295550 SPATS2Q86XZ4 545 aaKnown RBP10.9□□□□□ -0.67
COL6A3-201ENST00000295550 PROCA1Q8NCQ7 364 aaPredicted RBP10.9□□□□□ -0.67
COL6A3-201ENST00000295550 MRPL46Q9H2W6 279 aaKnown RBP10.9□□□□□ -0.67
COL6A3-201ENST00000295550 DENND2AQ9ULE3 1009 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms