RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 MYH4Q9Y623 1939 aa17.29■□□□□ 0.36
HMGN3-201ENST00000275036 ROBO3Q96MS0 1386 aa17.28■□□□□ 0.36
HMGN3-201ENST00000275036 IRX6P78412 446 aaPredicted RBP17.28■□□□□ 0.36
HMGN3-201ENST00000275036 LRRFIP1Q32MZ4 808 aaKnown RBP17.28■□□□□ 0.36
HMGN3-201ENST00000275036 STK11IPQ8N1F8 1099 aa17.28■□□□□ 0.36
HMGN3-201ENST00000275036 USP6NLQ92738 828 aa17.28■□□□□ 0.36
HMGN3-201ENST00000275036 PAK6Q9NQU5 681 aaPredicted RBP17.28■□□□□ 0.36
HMGN3-201ENST00000275036 MINDY4BA8MYZ0 360 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 FOXP2O15409 715 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 GNAT2P19087 354 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 CYP2B6P20813 491 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 NUCB1Q02818 461 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 LBX2Q6XYB7 198 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 CCDC129Q6ZRS4 1044 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 GPR142Q7Z601 462 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 CHD1LQ86WJ1 897 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 IFNL3Q8IZI9 196 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 GTF3C2Q8WUA4 911 aaPredicted RBP17.27■□□□□ 0.36
HMGN3-201ENST00000275036 EVI5LQ96CN4 794 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 CCDC17Q96LX7 622 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.27■□□□□ 0.36
HMGN3-201ENST00000275036 RABGAP1Q9Y3P9 1069 aa17.27■□□□□ 0.36
HMGN3-201ENST00000275036 COL11A1P12107 1806 aaPredicted RBP17.26■□□□□ 0.35
HMGN3-201ENST00000275036 PATL2C9JE40 543 aaKnown RBP17.26■□□□□ 0.35
HMGN3-201ENST00000275036 SGPL1O95470 568 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 HMGCRP04035 888 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 RASA1P20936 1047 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 ICA1Q05084 483 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 MORN1Q5T089 497 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 PLEKHM2Q8IWE5 1019 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 NKX2-3Q8TAU0 364 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 DEFB118Q96PH6 123 aa17.26■□□□□ 0.35
HMGN3-201ENST00000275036 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.26■□□□□ 0.35
HMGN3-201ENST00000275036 APPP05067 770 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 MAPK4P31152 587 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 TDO2P48775 406 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 CCL14Q16627 93 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 PLEKHH3Q7Z736 793 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 SPICE1Q8N0Z3 855 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 CRISPLD2Q9H0B8 497 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 TMX2Q9Y320 296 aa17.25■□□□□ 0.35
HMGN3-201ENST00000275036 EEF2P13639 858 aaKnown RBP17.24■□□□□ 0.35
HMGN3-201ENST00000275036 MAP3K21Q5TCX8 1036 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 SOCS4Q8WXH5 440 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 NUDT12Q9BQG2 462 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 TANGO6Q9C0B7 1094 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 VCPKMTQ9H867 229 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 ARHGEF10LQ9HCE6 1279 aa17.24■□□□□ 0.35
HMGN3-201ENST00000275036 A0A0D9SFI3 127 aa17.23■□□□□ 0.35
HMGN3-201ENST00000275036 SLC34A2O95436 690 aa17.23■□□□□ 0.35
HMGN3-201ENST00000275036 VPS53Q5VIR6 699 aa17.23■□□□□ 0.35
HMGN3-201ENST00000275036 FAM227BQ96M60 508 aa17.23■□□□□ 0.35
HMGN3-201ENST00000275036 ALPK3Q96L96 1907 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 ZNFX1Q9P2E3 1918 aaKnown RBP17.22■□□□□ 0.35
HMGN3-201ENST00000275036 PRDM1O75626 825 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 FARP2O94887 1054 aaPredicted RBP17.22■□□□□ 0.35
HMGN3-201ENST00000275036 XRCC5P13010 732 aaKnown RBP17.22■□□□□ 0.35
HMGN3-201ENST00000275036 MNX1P50219 401 aaPredicted RBP17.22■□□□□ 0.35
HMGN3-201ENST00000275036 ATP2B2Q01814 1243 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 COG2Q14746 738 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 DIS3LQ8TF46 1054 aaKnown RBP17.22■□□□□ 0.35
HMGN3-201ENST00000275036 OSBPL3Q9H4L5 887 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 KANSL2Q9H9L4 492 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 MKNK2Q9HBH9 465 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 FLRT1Q9NZU1 646 aa17.22■□□□□ 0.35
HMGN3-201ENST00000275036 RPTORQ8N122 1335 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 ZNF236Q9UL36 1845 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 CEP290O15078 2479 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 TRIM6-TRIM34B2RNG4 842 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 PRKAR2AP13861 404 aaKnown RBP17.21■□□□□ 0.35
HMGN3-201ENST00000275036 RGS2P41220 211 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 CACNB2Q08289 660 aaPredicted RBP17.21■□□□□ 0.35
HMGN3-201ENST00000275036 LPAR1Q92633 364 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 ATG4CQ96DT6 458 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 APBA2Q99767 749 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 MOV10L1Q9BXT6 1211 aaKnown RBP17.21■□□□□ 0.35
HMGN3-201ENST00000275036 NACAP1Q9BZK3 213 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 NAPBQ9H115 298 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 SH2D4AQ9H788 454 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 HELLSQ9NRZ9 838 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 TACC3Q9Y6A5 838 aa17.21■□□□□ 0.35
HMGN3-201ENST00000275036 IGKV6D-41A0A0C4DH26 115 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 H0YGN5 161 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 TFRCP02786 760 aaKnown RBP17.2■□□□□ 0.34
HMGN3-201ENST00000275036 ZKSCAN1P17029 563 aaPredicted RBP17.2■□□□□ 0.34
HMGN3-201ENST00000275036 PTPREP23469 700 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 DSG3P32926 999 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 CCNA1P78396 465 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 PPARAQ07869 468 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 MAP2K5Q13163 448 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 NMIQ13287 307 aaPredicted RBP17.2■□□□□ 0.34
HMGN3-201ENST00000275036 GRB14Q14449 540 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 WDR78Q5VTH9 848 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 ZNF589Q86UQ0 364 aaPredicted RBP17.2■□□□□ 0.34
HMGN3-201ENST00000275036 CCAR1Q8IX12 1150 aaKnown RBP17.2■□□□□ 0.34
HMGN3-201ENST00000275036 RILPL2Q969X0 211 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 FBXO28Q9NVF7 368 aa17.2■□□□□ 0.34
HMGN3-201ENST00000275036 FRMPD3Q5JV73 1810 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 WDR46O15213 610 aaKnown RBP17.19■□□□□ 0.34
HMGN3-201ENST00000275036 FLOT1O75955 427 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms