RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PDE6AP16499 860 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 NIM1KQ8IY84 436 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 IFIH1Q9BYX4 1025 aaKnown RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 NACA2Q9H009 215 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 TCP10L2B9ZVM9 353 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 COBLO75128 1261 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 ZNF445P59923 1031 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 EAPPQ56P03 285 aaPredicted RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 SND1Q7KZF4 910 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP53-201ENST00000274030 GPBP1Q86WP2 473 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 KSR1Q8IVT5 923 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 ZSCAN10Q96SZ4 725 aaPredicted RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 FLOT1O75955 427 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 BRD1O95696 1058 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 ALAS1P13196 640 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 IRX3P78415 501 aaPredicted RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 PSMD6Q15008 389 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 METTL13Q8N6R0 699 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 HINFPQ9BQA5 517 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 DKC1O60832 514 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP53-201ENST00000274030 BCRP11274 1271 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 ITIH3Q06033 890 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 U2AF1L4Q8WU68 220 aaKnown RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 LZTS2Q9BRK4 669 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 LSM14BQ9BX40 385 aaKnown RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 BTBD18B2RXH4 712 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 FGAP02671 866 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 PPP2R5BQ15173 497 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 FAM102BQ5T8I3 360 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 NLRX1Q86UT6 975 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 SMCR8Q8TEV9 937 aaPredicted RBP12.7□□□□□ -0.38
USP53-201ENST00000274030 TEKT1Q969V4 418 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 TNKSO95271 1327 aa12.7□□□□□ -0.38
USP53-201ENST00000274030 NOSTRINQ8IVI9 506 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 FANCBQ8NB91 859 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 PNMA1Q8ND90 353 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 STMN2Q93045 179 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 IMPACTQ9P2X3 320 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 ARPP21Q9UBL0 812 aaPredicted RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 GOLGA6BA6NDN3 693 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 ATP5DP30049 168 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 BLIDQ8IZY5 108 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 RNF169Q8NCN4 708 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 CCDC110Q8TBZ0 833 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 SSH3Q8TE77 659 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 ANO3Q9BYT9 981 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 KIAA1468Q9P260 1216 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 THRAP3Q9Y2W1 955 aaKnown RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 PRPF6O94906 941 aaKnown RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 PHKG2P15735 406 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 DNM2P50570 870 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 LACTBP83111 547 aaPredicted RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 GABPAQ06546 454 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 ADALQ6DHV7 355 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 TBC1D22AQ8WUA7 517 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 PUS3Q9BZE2 481 aaKnown RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 PSTPIP2Q9H939 334 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 MIER3Q7Z3K6 550 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 CCDC84Q86UT8 332 aaPredicted RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 MGARPQ8TDB4 240 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 BCS1LQ9Y276 419 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 EIF4G3O43432 1585 aaKnown RBP12.69□□□□□ -0.38
USP53-201ENST00000274030 BIVM-ERCC5R4GMW8 1640 aa12.69□□□□□ -0.38
USP53-201ENST00000274030 KRT15P19012 456 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 ZNF131P52739 623 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 VPS52Q8N1B4 723 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 KLRF2D3W0D1 207 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 ADAT2Q7Z6V5 191 aaKnown RBP12.68□□□□□ -0.38
USP53-201ENST00000274030 CDAN1Q8IWY9 1227 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 PCDHA12Q9UN75 941 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 IFNB1P01574 187 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 VPS41P49754 854 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 GUCY2FP51841 1108 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 CFAP221Q4G0U5 840 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 TM6SF1Q9BZW5 370 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 GREM2Q9H772 168 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 KCNJ18B7U540 433 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 ADORA1P30542 326 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 MAN1A1P33908 653 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 KCNJ12Q14500 433 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 CEP85LQ5SZL2 805 aa12.68□□□□□ -0.38
USP53-201ENST00000274030 BUB1O43683 1085 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 CERS3Q8IU89 383 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 DDX41Q9UJV9 622 aaKnown RBP12.67□□□□□ -0.38
USP53-201ENST00000274030 ZMYM4Q5VZL5 1548 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 GMNNO75496 209 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 TBC1D8O95759 1140 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 ALDH1B1P30837 517 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 PHKA1P46020 1223 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 PROSER3Q2NL68 480 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 FYB2Q5VWT5 728 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 SLC39A2Q9NP94 309 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 PZPP20742 1482 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 ERVV-2B6SEH9 535 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 CHRNDQ07001 517 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 LONRF2Q1L5Z9 754 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 GKAP1Q5VSY0 366 aaPredicted RBP12.67□□□□□ -0.38
USP53-201ENST00000274030 HHATQ5VTY9 493 aa12.67□□□□□ -0.38
USP53-201ENST00000274030 SDCCAG8Q86SQ7 713 aaPredicted RBP12.67□□□□□ -0.38
USP53-201ENST00000274030 TAB3Q8N5C8 712 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms