RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 PNMA1Q8ND90 353 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 WRNIP1Q96S55 665 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 ZNF341Q9BYN7 854 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 KAT14Q9H8E8 782 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 CABP5Q9NP86 173 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 ZBTB21Q9ULJ3 1066 aa11.39□□□□□ -0.59
SNRNP40-201ENST00000263694 JAK2O60674 1132 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 CTDNEP1O95476 244 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 TTLL1O95922 423 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 TOP1P11387 765 aaKnown RBP11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 ECE1P42892 770 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 NOVP48745 357 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 ICA1Q05084 483 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 TROAPQ12815 778 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 CCDC178Q5BJE1 867 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 SYNE3Q6ZMZ3 975 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 CDC37L1Q7L3B6 337 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 CATIPQ7Z7H3 387 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 CCDC82Q8N4S0 544 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 ZNF579Q8NAF0 562 aaKnown RBP11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 ACER1Q8TDN7 264 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 KANSL2Q9H9L4 492 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 ZNF112Q9UJU3 913 aa11.38□□□□□ -0.59
SNRNP40-201ENST00000263694 A0A1W2PRG0 241 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 USP17L5A8MUK1 530 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 RAD21O60216 631 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 NT5C2P49902 561 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 STAG2Q8N3U4 1231 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 FANCBQ8NB91 859 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 KLRG1Q96E93 195 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 DDX11Q96FC9 970 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 ZNF408Q9H9D4 720 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 PLSCR2Q9NRY7 297 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 TAOK2Q9UL54 1235 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 CTNND1O60716 968 aaKnown RBP11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 PLEKHA8P1O95397 391 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 GOLGA8HP0CJ92 632 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 TTLL12Q14166 644 aaPredicted RBP11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 ZYXQ15942 572 aaKnown RBP11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 RTN1Q16799 776 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 LDHDQ86WU2 507 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 NSUN7Q8NE18 718 aaKnown RBP11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 HOOK2Q96ED9 719 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 CPVLQ9H3G5 476 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 NYAP2Q9P242 653 aa11.37□□□□□ -0.59
SNRNP40-201ENST00000263694 DOCK1Q14185 1865 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 OTOFQ9HC10 1997 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 UBE2Q2LH0YL09 131 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 DDAH1O94760 285 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 GJB2P29033 226 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 FOSBP53539 338 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 DGKZQ13574 1117 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 NTRK3Q16288 839 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 KIAA1755Q5JYT7 1200 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 USP17L2Q6R6M4 530 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 NBPF11Q86T75 865 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 PHKBQ93100 1093 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 MKL1Q969V6 931 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 CLMNQ96JQ2 1002 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 MAD2L2Q9UI95 211 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 SMC3Q9UQE7 1217 aa11.36□□□□□ -0.59
SNRNP40-201ENST00000263694 FRMPD2Q68DX3 1309 aaPredicted RBP11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 hCG_1642624A0A1W2PR95 340 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 ASNSP08243 561 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 GRM4Q14833 912 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 SCYL3Q8IZE3 742 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 SPICE1Q8N0Z3 855 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 PIBF1Q8WXW3 757 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 INTS4Q96HW7 963 aaKnown RBP11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 NUP88Q99567 741 aaPredicted RBP11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 GPBP1L1Q9HC44 474 aaPredicted RBP11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 PHIPQ8WWQ0 1821 aa11.35□□□□□ -0.59
SNRNP40-201ENST00000263694 PTPDC1A2A3K4 754 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 CPLX1O14810 134 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 PPP1R12BO60237 982 aaPredicted RBP11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 PDHBP11177 359 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 FDPSP14324 419 aaKnown RBP11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 PTPRAP18433 802 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 NF2P35240 595 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 MAP3K9P80192 1104 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 VGLL4Q14135 290 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 SLC35G1Q2M3R5 365 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 KCTD1Q719H9 257 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 SRBD1Q8N5C6 995 aaKnown RBP11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 CTCFLQ8NI51 663 aaPredicted RBP11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 GPCPD1Q9NPB8 672 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 PAPPA2Q9BXP8 1791 aa11.34□□□□□ -0.59
SNRNP40-201ENST00000263694 MYH6P13533 1939 aa11.33□□□□□ -0.59
SNRNP40-201ENST00000263694 NID2Q14112 1375 aa11.33□□□□□ -0.59
SNRNP40-201ENST00000263694 F5H6K3 240 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ITGBL1O95965 494 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 PARP1P09874 1014 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CALM1P0DP23 149 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CALM2P0DP24 149 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CALM3P0DP25 149 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 DDIT3P35638 169 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 IREB2P48200 963 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms