RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 USP17L21D6R901 530 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 ZRANB2O95218 330 aaKnown RBP eCLIP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 CCDC12Q8WUD4 166 aaPredicted RBP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 CPLX3Q8WVH0 158 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 ST7Q9NRC1 585 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 WTIPA6NIX2 430 aaPredicted RBP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 PPP1R3GB7ZBB8 358 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 NOM1Q5C9Z4 860 aaKnown RBP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 GPR161Q8N6U8 529 aaKnown RBP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 IQUBQ8NA54 791 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 MRPL44Q9H9J2 332 aaKnown RBP21.24■□□□□ 0.99
CPSF3-201ENST00000238112 NPY5RQ15761 445 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 ERFEQ4G0M1 354 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 TEX35Q5T0J7 233 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 PYM1Q9BRP8 204 aaKnown RBP21.23■□□□□ 0.99
CPSF3-201ENST00000238112 CTNND2Q9UQB3 1225 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 MYH2Q9UKX2 1941 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 CACNA1SQ13698 1873 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 PBX1P40424 430 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 NLRP5P59047 1200 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 SRBD1Q8N5C6 995 aaKnown RBP21.23■□□□□ 0.99
CPSF3-201ENST00000238112 FAM84BQ96KN1 310 aaPredicted RBP21.23■□□□□ 0.99
CPSF3-201ENST00000238112 MINPP1Q9UNW1 487 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 COL4A1P02462 1669 aa21.23■□□□□ 0.99
CPSF3-201ENST00000238112 MFAP3LO75121 409 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 PIK3AP1Q6ZUJ8 805 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 STAMQ92783 540 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 LZTFL1Q9NQ48 299 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 TRAPPC10P48553 1259 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 SF3B3Q15393 1217 aaKnown RBP21.22■□□□□ 0.99
CPSF3-201ENST00000238112 CNGA4Q8IV77 575 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 ZNF384Q8TF68 577 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.22■□□□□ 0.99
CPSF3-201ENST00000238112 ADGRG1Q9Y653 693 aa21.22■□□□□ 0.99
CPSF3-201ENST00000238112 ORC4O43929 436 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 SCG2P13521 617 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 FAM193AP78312 1265 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 RAD9BQ6WBX8 426 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 C3orf67Q6ZVT6 689 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 CRNKL1Q9BZJ0 848 aaKnown RBP21.21■□□□□ 0.99
CPSF3-201ENST00000238112 BAZ2AQ9UIF9 1905 aaKnown RBP21.21■□□□□ 0.99
CPSF3-201ENST00000238112 XDHP47989 1333 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 KIF5CO60282 957 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 CLEC4GQ6UXB4 293 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 GOLGA1Q92805 767 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 NSUN4Q96CB9 384 aaKnown RBP21.21■□□□□ 0.99
CPSF3-201ENST00000238112 BLZF1Q9H2G9 400 aa21.21■□□□□ 0.99
CPSF3-201ENST00000238112 ATP8B1O43520 1251 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 NMT2O60551 498 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 CASP14P31944 242 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 MCM7P33993 719 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 PLA2G4AP47712 749 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 E2F4Q16254 413 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 FAM47AQ5JRC9 791 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 RRAGBQ5VZM2 374 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 RSRC2Q7L4I2 434 aaKnown RBP21.2■□□□□ 0.98
CPSF3-201ENST00000238112 CREBRFQ8IUR6 639 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 CCDC51Q96ER9 411 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 EPC1Q9H2F5 836 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 WNK3Q9BYP7 1800 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 ITIH6Q6UXX5 1313 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 RREB1Q92766 1687 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 SEC31AO94979 1220 aaKnown RBP21.2■□□□□ 0.98
CPSF3-201ENST00000238112 CCT6AP40227 531 aaKnown RBP21.2■□□□□ 0.98
CPSF3-201ENST00000238112 MECOMQ03112 1051 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 RABGGTAQ92696 567 aa21.2■□□□□ 0.98
CPSF3-201ENST00000238112 GTF2E1P29083 439 aaPredicted RBP21.19■□□□□ 0.98
CPSF3-201ENST00000238112 ANKRD20A12PQ8NF67 263 aa21.19■□□□□ 0.98
CPSF3-201ENST00000238112 IRX2Q9BZI1 471 aaPredicted RBP21.19■□□□□ 0.98
CPSF3-201ENST00000238112 DCP1AQ9NPI6 582 aaPredicted RBP21.19■□□□□ 0.98
CPSF3-201ENST00000238112 GTPBP6O43824 516 aaPredicted RBP21.18■□□□□ 0.98
CPSF3-201ENST00000238112 SPAG1Q07617 926 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 PFKFB3Q16875 520 aaPredicted RBP21.18■□□□□ 0.98
CPSF3-201ENST00000238112 RWDD2AQ9UIY3 292 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 TSPY2A6NKD2 308 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 N4BP3O15049 544 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 GYPCP04921 128 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 KIF5BP33176 963 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 PAK1Q13153 545 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 CC2D1AQ6P1N0 951 aaPredicted RBP21.18■□□□□ 0.98
CPSF3-201ENST00000238112 PDXDC2PQ6P474 469 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 RASGRP2Q7LDG7 609 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 FBXO33Q7Z6M2 555 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 ATP8A2Q9NTI2 1148 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 RMND1Q9NWS8 449 aa21.18■□□□□ 0.98
CPSF3-201ENST00000238112 MYH14Q7Z406 1995 aaKnown RBP21.18■□□□□ 0.98
CPSF3-201ENST00000238112 TXLNAP40222 546 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 EVX2Q03828 476 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 KRT31Q15323 416 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 MARCH10Q8NA82 808 aaPredicted RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 CELF1Q92879 486 aaKnown RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 ARPP21Q9UBL0 812 aaPredicted RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 LIMA1Q9UHB6 759 aaKnown RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 THRAP3Q9Y2W1 955 aaKnown RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 DLEC1Q9Y238 1755 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 SPATA31A1Q5TZJ5 1347 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 COL16A1Q07092 1604 aaPredicted RBP21.17■□□□□ 0.98
CPSF3-201ENST00000238112 COBLO75128 1261 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 CALML3P27482 149 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 FXR1P51114 621 aaKnown RBP eCLIP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms