RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 BRIP1Q9BX63 1249 aa16.9■□□□□ 0.3
UBE2D4-201ENST00000222402 EXOC1Q9NV70 894 aa16.9■□□□□ 0.3
UBE2D4-201ENST00000222402 HPSEQ9Y251 543 aa16.9■□□□□ 0.3
UBE2D4-201ENST00000222402 STX10O60499 249 aa16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 ERCC5P28715 1186 aaPredicted RBP16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 JAKMIP3Q5VZ66 844 aa16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 CCDC70Q6NSX1 233 aa16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 TEX11Q8IYF3 940 aa16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 CNBD1Q8NA66 436 aa16.89■□□□□ 0.3
UBE2D4-201ENST00000222402 CTIFO43310 598 aaKnown RBP16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 GOLGA8HP0CJ92 632 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 NCAPHQ15003 741 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 TMTC3Q6ZXV5 915 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 CALML4Q96GE6 196 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 ERLIN1O75477 346 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 PCP11498 1178 aaKnown RBP16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 FMR1Q06787 632 aaKnown RBP eCLIP16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 CTR9Q6PD62 1173 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 NELFBQ8WX92 580 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 PAGE5Q96GU1 130 aa16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 RNF216Q9NWF9 866 aaPredicted RBP16.89■□□□□ 0.29
UBE2D4-201ENST00000222402 TOB1P50616 345 aaPredicted RBP16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 SYCP1Q15431 976 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 INF2Q27J81 1249 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 DYNLL2Q96FJ2 89 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 GSDMAQ96QA5 445 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 ARFGAP3Q9NP61 516 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 UFL1O94874 794 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 CCDC96Q2M329 555 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 TBC1D9BQ66K14 1250 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 ADGRA1Q86SQ6 560 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 ZNF579Q8NAF0 562 aaKnown RBP16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 NKX2-3Q8TAU0 364 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 EEF2KMTQ96G04 330 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 MTA3Q9BTC8 594 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 KRT18P05783 430 aaKnown RBP16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 KRT9P35527 623 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 TRAPPC3LQ5T215 181 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 FBXO38Q6PIJ6 1188 aa16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 DCP1AQ9NPI6 582 aaPredicted RBP16.88■□□□□ 0.29
UBE2D4-201ENST00000222402 WTIPA6NIX2 430 aaPredicted RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 SMIM22K7EJ46 135 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 DIXDC1Q155Q3 683 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 NYAP1Q6ZVC0 841 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 GTPBP4Q9BZE4 634 aaKnown RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 C6orf50Q9HD87 102 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 FKBP15Q5T1M5 1219 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 ZSCAN29Q8IWY8 852 aaPredicted RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 GOLGA1Q92805 767 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 GUCA1BQ9UMX6 200 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 CTAGE9A4FU28 777 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 SEMA3EO15041 775 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 SLF2Q8IX21 1173 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 ANKRD7Q92527 254 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 PARP1P09874 1014 aaKnown RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 EPS15P42566 896 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 RBM5P52756 815 aaKnown RBP eCLIP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 AMPD3Q01432 767 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 TMEM266Q2M3C6 531 aa16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 FOXP4Q8IVH2 680 aaPredicted RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 RRP36Q96EU6 259 aaKnown RBP16.87■□□□□ 0.29
UBE2D4-201ENST00000222402 USP54Q70EL1 1684 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 TNNT3P45378 269 aaPredicted RBP16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 RCAN1P53805 252 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 EIF6P56537 245 aaKnown RBP16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 LUC7L2Q9Y383 392 aaKnown RBP16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 CCDC66A2RUB6 948 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 CASP14P31944 242 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 THRAP3Q9Y2W1 955 aaKnown RBP16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 ARFGEF2Q9Y6D5 1785 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 CCNT1O60563 726 aaKnown RBP16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 RBL2Q08999 1139 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 MORC3Q14149 939 aa16.86■□□□□ 0.29
UBE2D4-201ENST00000222402 GNA11P29992 359 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 GPR101Q96P66 508 aaPredicted RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 RAB34Q9BZG1 259 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 USP17L3A6NCW0 530 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 USP17L4A6NCW7 530 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 SOWAHDA6NJG2 315 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 TEX33O43247 280 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 TOM1O60784 492 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 NOM1Q5C9Z4 860 aaKnown RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 USP17L1Q7RTZ2 530 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 N4BP2Q86UW6 1770 aaPredicted RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 SLF1Q9BQI6 1058 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 ACBD3Q9H3P7 528 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 BMP2KQ9NSY1 1161 aaPredicted RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 GTPBP6O43824 516 aaPredicted RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 FCHSD1Q86WN1 690 aa16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 SRBD1Q8N5C6 995 aaKnown RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 NSUN4Q96CB9 384 aaKnown RBP16.85■□□□□ 0.29
UBE2D4-201ENST00000222402 TNS2Q63HR2 1409 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 RIMBP2O15034 1052 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 SPA17Q15506 151 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 KMT5BQ4FZB7 885 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 CCDC102AQ96A19 550 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 KCNJ18B7U540 433 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 KLRF2D3W0D1 207 aa16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 RPN1P04843 607 aaKnown RBP16.84■□□□□ 0.29
UBE2D4-201ENST00000222402 KLRK1P26718 216 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms