RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 CBFA2T2O43439 604 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 MYO1BO43795 1136 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 GRIN1Q05586 938 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 LRMPQ12912 555 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 CCDC144BQ3MJ40 725 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 TRIML1Q8N9V2 468 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 SHISA4Q96DD7 197 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 SH3GLB2Q9NR46 395 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 IMPACTQ9P2X3 320 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 POLLQ9UGP5 575 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 PCDHA5Q9Y5H7 936 aa9.44□□□□□ -0.9
VAMP3-201ENST00000054666 GAKO14976 1311 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 LTBP1Q14766 1721 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 KLRG2A4D1S0 409 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 USP17L3A6NCW0 530 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 USP17L4A6NCW7 530 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 PIK3AP1Q6ZUJ8 805 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 C16orf86Q6ZW13 317 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 USP17L1Q7RTZ2 530 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 LRRC8AQ8IWT6 810 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 SP8Q8IXZ3 490 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 NLGN1Q8N2Q7 840 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 PIAS4Q8N2W9 510 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 PDILTQ8N807 584 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 SLC44A5Q8NCS7 719 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 CCDC150Q8NCX0 1101 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 EYA3Q99504 573 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 LZTS2Q9BRK4 669 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 PYM1Q9BRP8 204 aaKnown RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 ANO8Q9HCE9 1232 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 IL17RBQ9NRM6 502 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 IFNKQ9P0W0 207 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 SERTAD1Q9UHV2 236 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 FAM205AQ6ZU69 1335 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 SNED1Q8TER0 1413 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 RASA1P20936 1047 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 LMOD1P29536 600 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 PLCD1P51178 756 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 ATP2C1P98194 919 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 ZNF174Q15697 407 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 EARS2Q5JPH6 523 aaKnown RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 CACTINQ8WUQ7 758 aaKnown RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 TNFRSF25Q93038 417 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 DHX58Q96C10 678 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 FAM163AQ96GL9 167 aaPredicted RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 XPO4Q9C0E2 1151 aaKnown RBP9.43□□□□□ -0.9
VAMP3-201ENST00000054666 COA1Q9GZY4 146 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 MTMR7Q9Y216 660 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 SUGT1Q9Y2Z0 365 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 ATP6V0A2Q9Y487 856 aa9.43□□□□□ -0.9
VAMP3-201ENST00000054666 MYH1P12882 1939 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 BAZ2BQ9UIF8 2168 aaKnown RBP9.42□□□□□ -0.9
VAMP3-201ENST00000054666 ACTN4O43707 911 aaKnown RBP9.42□□□□□ -0.9
VAMP3-201ENST00000054666 SERPINC1P01008 464 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 NPR1P16066 1061 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 KCNA4P22459 653 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 CDK8P49336 464 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 GTF2IP78347 998 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 FANCCQ00597 558 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 NCAPHQ15003 741 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 NPY5RQ15761 445 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 BLIDQ8IZY5 108 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 FAM177A1Q8N128 213 aaPredicted RBP9.42□□□□□ -0.9
VAMP3-201ENST00000054666 MLKLQ8NB16 471 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 SYMPKQ92797 1274 aaKnown RBP9.42□□□□□ -0.9
VAMP3-201ENST00000054666 MAN1B1Q9UKM7 699 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 PCDHA4Q9UN74 947 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 ANKRD31Q8N7Z5 1873 aa9.42□□□□□ -0.9
VAMP3-201ENST00000054666 CCDC194A0A1B0GVG4 234 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 G3V3G9 751 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 RIMBP2O15034 1052 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 ALDH1B1P30837 517 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 TXLNAP40222 546 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 PTGDRQ13258 359 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 DCAF8Q5TAQ9 597 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 NT5DC1Q5TFE4 455 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 GALNT17Q6IS24 598 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 TMC6Q7Z403 805 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 HEATR3Q7Z4Q2 680 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 STAG2Q8N3U4 1231 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 FLAD1Q8NFF5 587 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 CCDC12Q8WUD4 166 aaPredicted RBP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 GPKOWQ92917 476 aaPredicted RBP eCLIP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 TMEM47Q9BQJ4 181 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 ZC3H12CQ9C0D7 883 aaKnown RBP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 OSBPL5Q9H0X9 879 aaPredicted RBP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 MAD2L2Q9UI95 211 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 FOCADQ5VW36 1801 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 NRXN2Q9P2S2 1712 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 VWA3AA6NCI4 1184 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 FOXN1O15353 648 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 PARP1P09874 1014 aaKnown RBP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 PRR29P0C7W0 189 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 SFPQP23246 707 aaKnown RBP eCLIP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 MCM7P33993 719 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 PDE6BP35913 854 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 RHBDL3P58872 404 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 MDM2Q00987 491 aaPredicted RBP9.41□□□□□ -0.9
VAMP3-201ENST00000054666 CFAP100Q494V2 611 aa9.41□□□□□ -0.9
VAMP3-201ENST00000054666 NEDD1Q8NHV4 660 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms