RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TFRCP02786 760 aaKnown RBP12.41□□□□□ -0.42
SCN1A-222ENST00000642141 CYP2B6P20813 491 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 TRIM32Q13049 653 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 CCAR1Q8IX12 1150 aaKnown RBP12.41□□□□□ -0.42
SCN1A-222ENST00000642141 OTUD7AQ8TE49 926 aaPredicted RBP12.41□□□□□ -0.42
SCN1A-222ENST00000642141 DEFB118Q96PH6 123 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
SCN1A-222ENST00000642141 GJD2Q9UKL4 321 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 LOC285556D6RIA3 1793 aa12.41□□□□□ -0.42
SCN1A-222ENST00000642141 A0A1W2PRG0 241 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 GJB1P08034 283 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 RRP1P56182 461 aaKnown RBP12.4□□□□□ -0.42
SCN1A-222ENST00000642141 GABPAQ06546 454 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 SAMD1Q6SPF0 538 aaPredicted RBP12.4□□□□□ -0.42
SCN1A-222ENST00000642141 U2AF1L4Q8WU68 220 aaKnown RBP12.4□□□□□ -0.42
SCN1A-222ENST00000642141 DPF3Q92784 378 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 CRBNQ96SW2 442 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 KIAA1683Q9H0B3 1180 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 PORCNQ9H237 461 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 RPAP3Q9H6T3 665 aaPredicted RBP12.4□□□□□ -0.42
SCN1A-222ENST00000642141 MORF4L1Q9UBU8 362 aa12.4□□□□□ -0.42
SCN1A-222ENST00000642141 USP17L15C9J2P7 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L13C9JLJ4 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L11C9JVI0 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L18D6R9N7 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L22D6RA61 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L17D6RBQ6 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L19D6RCP7 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L20D6RJB6 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 AKR1B1P15121 316 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 VCAM1P19320 739 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 GJA8P48165 433 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 ERVK-9P63128 1117 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 ERVK-24P63145 666 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 ATP2B2Q01814 1243 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 USP17L24Q0WX57 530 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 IRF5Q13568 498 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 UBE3CQ15386 1083 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 KIAA1755Q5JYT7 1200 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 WDR78Q5VTH9 848 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 ZSCAN25Q6NSZ9 544 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 SPICE1Q8N0Z3 855 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 PXYLP1Q8TE99 480 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 GPATCH3Q96I76 525 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 CWC22Q9HCG8 908 aaKnown RBP12.39□□□□□ -0.43
SCN1A-222ENST00000642141 ATP8A2Q9NTI2 1148 aa12.39□□□□□ -0.43
SCN1A-222ENST00000642141 RBBP6Q7Z6E9 1792 aaKnown RBP12.38□□□□□ -0.43
SCN1A-222ENST00000642141 H0YGN5 161 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 CNMDO75829 334 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 SGPL1O95470 568 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 CDK8P49336 464 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 USP14P54578 494 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 C12orf60Q5U649 245 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 CTR9Q6PD62 1173 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 CATSPERGQ6ZRH7 1159 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 NKX2-3Q8TAU0 364 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 OSBP2Q969R2 916 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 DDRGK1Q96HY6 314 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 TANGO6Q9C0B7 1094 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 NAV1Q8NEY1 1877 aa12.38□□□□□ -0.43
SCN1A-222ENST00000642141 MINDY4BA8MYZ0 360 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 RAD21O60216 631 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 CCL14Q16627 93 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 SIAH1Q8IUQ4 282 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 AMOTL1Q8IY63 956 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 KBTBD3Q8NAB2 608 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 C12orf42Q96LP6 360 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 STRBPQ96SI9 672 aaKnown RBP12.37□□□□□ -0.43
SCN1A-222ENST00000642141 NUDT12Q9BQG2 462 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 BTBD7Q9P203 1132 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 SWAP70Q9UH65 585 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 DOCK3Q8IZD9 2030 aa12.37□□□□□ -0.43
SCN1A-222ENST00000642141 M0R2C6 588 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 RNF113AO15541 343 aaKnown RBP12.36□□□□□ -0.43
SCN1A-222ENST00000642141 FARP2O94887 1054 aaPredicted RBP12.36□□□□□ -0.43
SCN1A-222ENST00000642141 HMGCRP04035 888 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 APPP05067 770 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 MAPK4P31152 587 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 TMEM179Q6ZVK1 233 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 GPR142Q7Z601 462 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 PLEKHH3Q7Z736 793 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 TRIB2Q92519 343 aa12.36□□□□□ -0.43
SCN1A-222ENST00000642141 SEC62Q99442 399 aaKnown RBP12.36□□□□□ -0.43
SCN1A-222ENST00000642141 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.36□□□□□ -0.43
SCN1A-222ENST00000642141 DDX60LQ5H9U9 1706 aaKnown RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 GSG1L2A8MUP6 293 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 SLC34A2O95436 690 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 EEF2P13639 858 aaKnown RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 ICA1Q05084 483 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 PLS1Q14651 629 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 ANKRD45Q5TZF3 282 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 DIS3LQ8TF46 1054 aaKnown RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 HMX1Q9NP08 348 aaPredicted RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 PAK6Q9NQU5 681 aaPredicted RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 RABGAP1Q9Y3P9 1069 aa12.35□□□□□ -0.43
SCN1A-222ENST00000642141 BAZ2AQ9UIF9 1905 aaKnown RBP12.35□□□□□ -0.43
SCN1A-222ENST00000642141 SPDYE16A6NNV3 312 aaPredicted RBP12.34□□□□□ -0.43
SCN1A-222ENST00000642141 GPAA1O43292 621 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 ZKSCAN1P17029 563 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms