RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 IFNAR1P17181 557 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 GNL2Q13823 731 aaKnown RBP13.26□□□□□ -0.29
CLN6-217ENST00000636964 TEX11Q8IYF3 940 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 BANK1Q8NDB2 785 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 RCOR1Q9UKL0 485 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 KCNJ14Q9UNX9 436 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 FMNL1O95466 1100 aaPredicted RBP13.26□□□□□ -0.29
CLN6-217ENST00000636964 ME1P48163 572 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 SCNN1DP51172 638 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 PPP4CP60510 307 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
CLN6-217ENST00000636964 TFAP4Q01664 338 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 CERS5Q8N5B7 392 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 COA1Q9GZY4 146 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 UVSSAQ2YD98 709 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 CATIPQ7Z7H3 387 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 CKAP2LQ8IYA6 745 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 CRACR2BQ8N4Y2 399 aaPredicted RBP13.26□□□□□ -0.29
CLN6-217ENST00000636964 MKNK2Q9HBH9 465 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 MTMR7Q9Y216 660 aa13.26□□□□□ -0.29
CLN6-217ENST00000636964 TNS1Q9HBL0 1735 aaKnown RBP13.26□□□□□ -0.29
CLN6-217ENST00000636964 GPR75-ASB3A0A0A6YYF3 556 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 IRF6O14896 467 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 ORC4O43929 436 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 TRIM29Q14134 588 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 MYSM1Q5VVJ2 828 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 NBPF11Q86T75 865 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 TRIM22Q8IYM9 498 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 PLEKHA8P1O95397 391 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 PICALMQ13492 652 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 TBC1D22AQ8WUA7 517 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 MTA3Q9BTC8 594 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 FUCA2Q9BTY2 467 aa13.25□□□□□ -0.29
CLN6-217ENST00000636964 USP17L3A6NCW0 530 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 USP17L4A6NCW7 530 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 USP17L1Q7RTZ2 530 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 CCAR1Q8IX12 1150 aaKnown RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 NUP62CLQ9H1M0 184 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 MAST2Q6P0Q8 1798 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 CCDC196A0A1B0GTZ2 297 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 TROAPQ12815 778 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 STK38Q15208 465 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 TTF2Q9UNY4 1162 aaKnown RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 DAGLAQ9Y4D2 1042 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 BAZ2BQ9UIF8 2168 aaKnown RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 COL11A2P13942 1736 aaPredicted RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 PCP11498 1178 aaKnown RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 RHBDL3P58872 404 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 SF3A1Q15459 793 aaKnown RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 ZNF771Q7L3S4 317 aaPredicted RBP13.24□□□□□ -0.29
CLN6-217ENST00000636964 AMOTL1Q8IY63 956 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 NRXN2Q9P2S2 1712 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 FAM205AQ6ZU69 1335 aa13.24□□□□□ -0.29
CLN6-217ENST00000636964 BTBD18B2RXH4 712 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 GOLPH3LQ9H4A5 285 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 IL17RBQ9NRM6 502 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 GEMIN8Q9NWZ8 242 aaKnown RBP13.23□□□□□ -0.29
CLN6-217ENST00000636964 OGFRQ9NZT2 677 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 PCDHA7Q9UN72 937 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 V9GY48 417 aaPredicted RBP13.23□□□□□ -0.29
CLN6-217ENST00000636964 BRAPQ7Z569 592 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 LINC00301Q8NCQ3 95 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 TNMDQ9H2S6 317 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 RTEL1Q9NZ71 1219 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 MARCKSP29966 332 aaPredicted RBP13.23□□□□□ -0.29
CLN6-217ENST00000636964 RCSD1Q6JBY9 416 aa13.23□□□□□ -0.29
CLN6-217ENST00000636964 ZNF444Q8N0Y2 327 aaPredicted RBP13.23□□□□□ -0.29
CLN6-217ENST00000636964 LTBP1Q14766 1721 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 FLT1P17948 1338 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 LRRC37AA6NMS7 1700 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 TSPY3P0CV98 308 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 TSPY8P0CW00 308 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 FEZ1Q99689 392 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 KIAA1551Q9HCM1 1747 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 DEXIO95424 95 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 AKAP17AQ02040 695 aaKnown RBP13.22□□□□□ -0.29
CLN6-217ENST00000636964 ATL3Q6DD88 541 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 SLF2Q8IX21 1173 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLN6-217ENST00000636964 VPS54Q9P1Q0 977 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 STK36Q9NRP7 1315 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 MYH15Q9Y2K3 1946 aa13.22□□□□□ -0.29
CLN6-217ENST00000636964 NR5A1Q13285 461 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 SF3B2Q13435 895 aaKnown RBP13.21□□□□□ -0.29
CLN6-217ENST00000636964 ANO1Q5XXA6 986 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 DIS3L2Q8IYB7 885 aaKnown RBP13.21□□□□□ -0.29
CLN6-217ENST00000636964 FSIP1Q8NA03 581 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 WASF1Q92558 559 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 FAM163AQ96GL9 167 aaPredicted RBP13.21□□□□□ -0.29
CLN6-217ENST00000636964 DDX41Q9UJV9 622 aaKnown RBP13.21□□□□□ -0.29
CLN6-217ENST00000636964 STX8Q9UNK0 236 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 LOC102724159A0A0B4J2E5 919 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 A0A1B0GVL5 298 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 SPTLC2O15270 562 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 ATP2B1P20020 1258 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 PWP2Q15269 919 aaKnown RBP13.21□□□□□ -0.29
CLN6-217ENST00000636964 MAP3K11Q16584 847 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 SPC24Q8NBT2 197 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 OXER1Q8TDS5 423 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 PCDHAC2Q9Y5I4 1007 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms