RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SLC4A4Q9Y6R1 1079 aa21.34■■□□□ 1.01
CLN3-247ENST00000636351 GPAA1O43292 621 aa21.33■■□□□ 1.01
CLN3-247ENST00000636351 PRKAB2O43741 272 aa21.33■■□□□ 1.01
CLN3-247ENST00000636351 GSPT1P15170 499 aaKnown RBP21.33■■□□□ 1.01
CLN3-247ENST00000636351 SKAP1Q86WV1 359 aa21.33■■□□□ 1.01
CLN3-247ENST00000636351 TBC1D2Q9BYX2 928 aa21.33■■□□□ 1.01
CLN3-247ENST00000636351 CRACR2BQ8N4Y2 399 aaPredicted RBP21.32■■□□□ 1
CLN3-247ENST00000636351 DEFB118Q96PH6 123 aa21.32■■□□□ 1
CLN3-247ENST00000636351 SEC62Q99442 399 aaKnown RBP21.32■■□□□ 1
CLN3-247ENST00000636351 DIAPH3Q9NSV4 1193 aa21.32■■□□□ 1
CLN3-247ENST00000636351 MCM9Q9NXL9 1143 aa21.32■■□□□ 1
CLN3-247ENST00000636351 RBM27Q9P2N5 1060 aaKnown RBP21.32■■□□□ 1
CLN3-247ENST00000636351 HERC5Q9UII4 1024 aaKnown RBP21.32■■□□□ 1
CLN3-247ENST00000636351 LOC285556D6RIA3 1793 aa21.32■■□□□ 1
CLN3-247ENST00000636351 TRIOBPQ9H2D6 2365 aa21.32■■□□□ 1
CLN3-247ENST00000636351 MYH1P12882 1939 aa21.31■■□□□ 1
CLN3-247ENST00000636351 USP17L5A8MUK1 530 aa21.31■■□□□ 1
CLN3-247ENST00000636351 POLR3DP05423 398 aaPredicted RBP21.31■■□□□ 1
CLN3-247ENST00000636351 PABPC4Q13310 644 aaKnown RBP eCLIP21.31■■□□□ 13e-6■■■■□ 26.6
CLN3-247ENST00000636351 STRBPQ96SI9 672 aaKnown RBP21.31■■□□□ 1
CLN3-247ENST00000636351 PI4KBQ9UBF8 816 aa21.31■■□□□ 1
CLN3-247ENST00000636351 HIP1O00291 1037 aa21.3■■□□□ 1
CLN3-247ENST00000636351 TFRCP02786 760 aaKnown RBP21.3■■□□□ 1
CLN3-247ENST00000636351 GNAT2P19087 354 aa21.3■■□□□ 1
CLN3-247ENST00000636351 SDSP20132 328 aa21.3■■□□□ 1
CLN3-247ENST00000636351 GCLCP48506 637 aaPredicted RBP21.3■■□□□ 1
CLN3-247ENST00000636351 NMIQ13287 307 aaPredicted RBP21.3■■□□□ 1
CLN3-247ENST00000636351 AMOTL1Q8IY63 956 aa21.3■■□□□ 1
CLN3-247ENST00000636351 FAM227BQ96M60 508 aa21.3■■□□□ 1
CLN3-247ENST00000636351 ASCC2Q9H1I8 757 aaPredicted RBP21.3■■□□□ 1
CLN3-247ENST00000636351 AS3MTQ9HBK9 375 aa21.3■■□□□ 1
CLN3-247ENST00000636351 DCP1AQ9NPI6 582 aaPredicted RBP21.3■■□□□ 1
CLN3-247ENST00000636351 PAK6Q9NQU5 681 aaPredicted RBP21.3■■□□□ 1
CLN3-247ENST00000636351 ATP8A2Q9NTI2 1148 aa21.3■■□□□ 1
CLN3-247ENST00000636351 NR2E3Q9Y5X4 410 aa21.3■■□□□ 1
CLN3-247ENST00000636351 ATAD5Q96QE3 1844 aa21.29■■□□□ 1
CLN3-247ENST00000636351 A0A0D9SFI3 127 aa21.29■■□□□ 1
CLN3-247ENST00000636351 APPP05067 770 aa21.29■■□□□ 1
CLN3-247ENST00000636351 SH3D19Q5HYK7 790 aa21.29■■□□□ 1
CLN3-247ENST00000636351 CCDC129Q6ZRS4 1044 aa21.29■■□□□ 1
CLN3-247ENST00000636351 TTC6Q86TZ1 520 aa21.29■■□□□ 1
CLN3-247ENST00000636351 TICAM2Q86XR7 235 aa21.29■■□□□ 1
CLN3-247ENST00000636351 HELLSQ9NRZ9 838 aa21.29■■□□□ 1
CLN3-247ENST00000636351 DDX60LQ5H9U9 1706 aaKnown RBP21.29■■□□□ 1
CLN3-247ENST00000636351 DNAJC18Q9H819 358 aa21.28■■□□□ 1
CLN3-247ENST00000636351 SIPA1L1O43166 1804 aa21.27■■□□□ 1
CLN3-247ENST00000636351 TDO2P48775 406 aa21.27■■□□□ 1
CLN3-247ENST00000636351 JAG1P78504 1218 aa21.27■■□□□ 1
CLN3-247ENST00000636351 MTMR2Q13614 643 aa21.27■■□□□ 1
CLN3-247ENST00000636351 MCMDC2Q4G0Z9 681 aa21.27■■□□□ 1
CLN3-247ENST00000636351 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.27■■□□□ 1
CLN3-247ENST00000636351 RANBP2P49792 3224 aaKnown RBP21.27■■□□□ 1
CLN3-247ENST00000636351 BAZ2AQ9UIF9 1905 aaKnown RBP21.26■□□□□ 0.99
CLN3-247ENST00000636351 CYP2D6P10635 497 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 BACE1P56817 501 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 CWC27Q6UX04 472 aaKnown RBP21.26■□□□□ 0.99
CLN3-247ENST00000636351 WDR18Q9BV38 432 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 NACAP1Q9BZK3 213 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 CRISPLD2Q9H0B8 497 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 PRO3102Q9H379 93 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 TMOD4Q9NZQ9 345 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 SERPINB13Q9UIV8 391 aa21.26■□□□□ 0.99
CLN3-247ENST00000636351 SZT2Q5T011 3432 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 GSG1L2A8MUP6 293 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 EVI5O60447 810 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 HMGCRP04035 888 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 ASNSP08243 561 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 CAPN2P17655 700 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 IRX3P78415 501 aaPredicted RBP21.25■□□□□ 0.99
CLN3-247ENST00000636351 SHROOM1Q2M3G4 852 aaPredicted RBP21.25■□□□□ 0.99
CLN3-247ENST00000636351 FOXP4Q8IVH2 680 aaPredicted RBP21.25■□□□□ 0.99
CLN3-247ENST00000636351 PAWRQ96IZ0 340 aaKnown RBP21.25■□□□□ 0.99
CLN3-247ENST00000636351 ARPP21Q9UBL0 812 aaPredicted RBP21.25■□□□□ 0.99
CLN3-247ENST00000636351 MORF4L1Q9UBU8 362 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 GJD2Q9UKL4 321 aa21.25■□□□□ 0.99
CLN3-247ENST00000636351 USP17L12C9JPN9 530 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 USP17L21D6R901 530 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 GDF11O95390 407 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 PLCD1P51178 756 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 MFAP1P55081 439 aaKnown RBP21.24■□□□□ 0.99
CLN3-247ENST00000636351 TRIM32Q13049 653 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 DIS3LQ8TF46 1054 aaKnown RBP21.24■□□□□ 0.99
CLN3-247ENST00000636351 NAPBQ9H115 298 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 EHD4Q9H223 541 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 EPB41L4AQ9HCS5 686 aaPredicted RBP21.24■□□□□ 0.99
CLN3-247ENST00000636351 CCDC171Q6TFL3 1326 aa21.24■□□□□ 0.99
CLN3-247ENST00000636351 CYP2D7A0A087X1C5 515 aa21.23■□□□□ 0.99
CLN3-247ENST00000636351 PATL2C9JE40 543 aaKnown RBP21.23■□□□□ 0.99
CLN3-247ENST00000636351 PEX10O60683 326 aa21.23■□□□□ 0.99
CLN3-247ENST00000636351 GIMAP6Q6P9H5 292 aa21.23■□□□□ 0.99
CLN3-247ENST00000636351 ZNF589Q86UQ0 364 aaPredicted RBP21.23■□□□□ 0.99
CLN3-247ENST00000636351 METTL16Q86W50 562 aaKnown RBP21.23■□□□□ 0.99
CLN3-247ENST00000636351 P2RX7Q99572 595 aaKnown RBP21.23■□□□□ 0.99
CLN3-247ENST00000636351 EVX2Q03828 476 aa21.22■□□□□ 0.99
CLN3-247ENST00000636351 CTR9Q6PD62 1173 aa21.22■□□□□ 0.99
CLN3-247ENST00000636351 IFNL3Q8IZI9 196 aa21.22■□□□□ 0.99
CLN3-247ENST00000636351 ZBTB21Q9ULJ3 1066 aa21.22■□□□□ 0.99
CLN3-247ENST00000636351 RPTORQ8N122 1335 aa21.22■□□□□ 0.99
CLN3-247ENST00000636351 MINDY4BA8MYZ0 360 aa21.21■□□□□ 0.99
CLN3-247ENST00000636351 C19orf81C9J6K1 198 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms