RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 DOCK1Q14185 1865 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 CTNND1O60716 968 aaKnown RBP24.15■■□□□ 1.46
CLN3-245ENST00000636172 USP2O75604 605 aaPredicted RBP24.15■■□□□ 1.46
CLN3-245ENST00000636172 INPP5BP32019 993 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 EVCP57679 992 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 PRKG1Q13976 671 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 SEPT2Q15019 361 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 IFIT1BQ5T764 474 aaKnown RBP24.15■■□□□ 1.46
CLN3-245ENST00000636172 CHADLQ6NUI6 762 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 DGKHQ86XP1 1220 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 KLRG1Q96E93 195 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 WRNIP1Q96S55 665 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 CABP5Q9NP86 173 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 OTOFQ9HC10 1997 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 NF2P35240 595 aa24.15■■□□□ 1.46
CLN3-245ENST00000636172 FMR1Q06787 632 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLN3-245ENST00000636172 KLF18A0A0U1RQI7 1052 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 K7ELQ4 463 aaPredicted RBP24.14■■□□□ 1.45
CLN3-245ENST00000636172 KIF3CO14782 793 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 LARGE1O95461 756 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 RAB3GAP1Q15042 981 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 NFXL1Q6ZNB6 911 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 TMTC2Q8N394 836 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.14■■□□□ 1.45
CLN3-245ENST00000636172 KANSL2Q9H9L4 492 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 STX8Q9UNK0 236 aa24.14■■□□□ 1.45
CLN3-245ENST00000636172 MYH4Q9Y623 1939 aa24.13■■□□□ 1.45
CLN3-245ENST00000636172 PPP1R12BO60237 982 aaPredicted RBP24.13■■□□□ 1.45
CLN3-245ENST00000636172 TMX3Q96JJ7 454 aa24.13■■□□□ 1.45
CLN3-245ENST00000636172 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.13■■□□□ 1.45
CLN3-245ENST00000636172 CCDC69A6NI79 296 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 TTLL1O95922 423 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 ASNSP08243 561 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 ICA1Q05084 483 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 ME3Q16798 604 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 APOA5Q6Q788 366 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 ZKSCAN4Q969J2 545 aaPredicted RBP24.12■■□□□ 1.45
CLN3-245ENST00000636172 TMEM47Q9BQJ4 181 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 GINM1Q9NU53 330 aa24.12■■□□□ 1.45
CLN3-245ENST00000636172 ITGBL1O95965 494 aaPredicted RBP24.11■■□□□ 1.45
CLN3-245ENST00000636172 BECN1Q14457 450 aa24.11■■□□□ 1.45
CLN3-245ENST00000636172 SIAH1Q8IUQ4 282 aa24.11■■□□□ 1.45
CLN3-245ENST00000636172 SCYL3Q8IZE3 742 aa24.11■■□□□ 1.45
CLN3-245ENST00000636172 ZNF274Q96GC6 653 aaPredicted RBP24.11■■□□□ 1.45
CLN3-245ENST00000636172 SLC12A7Q9Y666 1083 aa24.11■■□□□ 1.45
CLN3-245ENST00000636172 GOLGA8BA8MQT2 603 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 TOP1P11387 765 aaKnown RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 EEF2P13639 858 aaKnown RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 PDIA3P30101 505 aaKnown RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 PPP4R3BQ5MIZ7 849 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 MOB2Q70IA6 237 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 ZNF654Q8IZM8 581 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 ZSCAN31Q96LW9 406 aaPredicted RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 MYL10Q9BUA6 226 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 KAT14Q9H8E8 782 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 NYAP2Q9P242 653 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 CLIP2Q9UDT6 1046 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 NAP1L2Q9ULW6 460 aaPredicted RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 HPS5Q9UPZ3 1129 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 IREB2P48200 963 aaKnown RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 NOL9Q5SY16 702 aaKnown RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 RAB11FIP4Q86YS3 637 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 ZNF408Q9H9D4 720 aa24.1■■□□□ 1.45
CLN3-245ENST00000636172 SH2B1Q9NRF2 756 aaPredicted RBP24.1■■□□□ 1.45
CLN3-245ENST00000636172 MAP3K9P80192 1104 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 ATP2B2Q01814 1243 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 STK3Q13188 491 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 TTLL12Q14166 644 aaPredicted RBP24.09■■□□□ 1.45
CLN3-245ENST00000636172 MAP3K11Q16584 847 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 CATIPQ7Z7H3 387 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 CCDC84Q86UT8 332 aaPredicted RBP24.09■■□□□ 1.45
CLN3-245ENST00000636172 LRRC47Q8N1G4 583 aaKnown RBP24.09■■□□□ 1.45
CLN3-245ENST00000636172 PNMA1Q8ND90 353 aa24.09■■□□□ 1.45
CLN3-245ENST00000636172 ZBTB43O43298 467 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 PFKFB2O60825 505 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 TROAPQ12815 778 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 VGLL4Q14135 290 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 MICU3Q86XE3 530 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 NECAB1Q8N987 351 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 MKL1Q969V6 931 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 PICK1Q9NRD5 415 aa24.08■■□□□ 1.45
CLN3-245ENST00000636172 TRPM7Q96QT4 1865 aa24.08■■□□□ 1.44
CLN3-245ENST00000636172 PHIPQ8WWQ0 1821 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 DDAH1O94760 285 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 RXRAP19793 462 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 ST3GAL1Q11201 340 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 SYNE3Q6ZMZ3 975 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 ARMC9Q7Z3E5 817 aa24.07■■□□□ 1.44
CLN3-245ENST00000636172 SLKQ9H2G2 1235 aaPredicted RBP24.07■■□□□ 1.44
CLN3-245ENST00000636172 NID2Q14112 1375 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 A0A1W2PRG0 241 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 PTPRAP18433 802 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 RCAN1P53805 252 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 ACER1Q8TDN7 264 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 SNCAIPQ9Y6H5 919 aa24.06■■□□□ 1.44
CLN3-245ENST00000636172 CELF2O95319 508 aaKnown RBP24.05■■□□□ 1.44
CLN3-245ENST00000636172 SLC4A3P48751 1232 aa24.05■■□□□ 1.44
CLN3-245ENST00000636172 CCT2P78371 535 aaKnown RBP24.05■■□□□ 1.44
CLN3-245ENST00000636172 SCRN1Q12765 414 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms