RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SENP2	Q9HC62	589 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ATP8A2	Q9NTI2	1148 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ZSWIM5	Q9P217	1185 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	BRPF3	Q9ULD4	1205 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SUGT1	Q9Y2Z0	365 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	DAGLA	Q9Y4D2	1042 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TRIM17	Q9Y577	477 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SIPA1L1	O43166	1804 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587		F8W031	263 aa	Predicted RBP	11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	BAG3	O95817	575 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CYP2D6	P10635	497 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	BTD	P43251	543 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TNNI2	P48788	182 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SCRN1	Q12765	414 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	STK3	Q13188	491 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	RASA3	Q14644	834 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	OTOP1	Q7RTM1	612 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SLF2	Q8IX21	1173 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	IGDCC4	Q8TDY8	1250 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CLRN2	A0PK11	232 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	MINDY4B	A8MYZ0	360 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PFKFB2	O60825	505 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	WDHD1	O75717	1129 aa	Predicted RBP	11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CTDNEP1	O95476	244 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PDIA3	P30101	505 aa	Known RBP	11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SBK1	Q52WX2	424 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CERS3	Q8IU89	383 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	STK11IP	Q8N1F8	1099 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ANP32E	Q9BTT0	268 aa		11.17	□□□□□ -0.62
PDLIM5-223	ENST00000627587	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SH2B2	O14492	632 aa	Predicted RBP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	KDM4A	O75164	1064 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	BRD1	O95696	1058 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	HDLBP	Q00341	1268 aa	Known RBP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SP3	Q02447	781 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CLEC17A	Q6ZS10	378 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	MFSD6	Q6ZSS7	791 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ZNF274	Q96GC6	653 aa	Predicted RBP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CLMN	Q96JQ2	1002 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	EFCC1	Q9HA90	598 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ZNF70	Q9UC06	446 aa	Predicted RBP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PTPN22	Q9Y2R2	807 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	MYH8	P13535	1937 aa		11.16	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ROBO3	Q96MS0	1386 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GJB2	P29033	226 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NUCB2	P80303	420 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TGFBRAP1	Q8WUH2	860 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	HOOK2	Q96ED9	719 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	MRI	Q9BWK5	157 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	RNF41	Q9H4P4	317 aa	Predicted RBP	11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CNNM2	Q9H8M5	875 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	LY9	Q9HBG7	655 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TTF2	Q9UNY4	1162 aa	Known RBP	11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	FZD1	Q9UP38	647 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PCDHAC2	Q9Y5I4	1007 aa		11.15	□□□□□ -0.62
PDLIM5-223	ENST00000627587	JAK2	O60674	1132 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	GTF2A2	P52657	109 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	MAP3K9	P80192	1104 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	CRHR2	Q13324	411 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	C12orf60	Q5U649	245 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	ARMC5	Q96C12	935 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	CHAMP1	Q96JM3	812 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	KRT23	Q9C075	422 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	ZFYVE28	Q9HCC9	887 aa		11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	NCOA5	Q9HCD5	579 aa	Known RBP	11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.15	□□□□□ -0.63
PDLIM5-223	ENST00000627587	FLT1	P17948	1338 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SSC5D	A1L4H1	1573 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	PRDM1	O75626	825 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	PLCG2	P16885	1265 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SYT1	P21579	422 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	PLCD1	P51178	756 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	CCT2	P78371	535 aa	Known RBP	11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SLC4A8	Q2Y0W8	1093 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	HHIPL2	Q6UWX4	724 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	NBPF11	Q86T75	865 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SGMS1	Q86VZ5	419 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	NSUN7	Q8NE18	718 aa	Known RBP	11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SMARCC2	Q8TAQ2	1214 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	TMEM87B	Q96K49	555 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	TMEM106C	Q9BVX2	250 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	MCM9	Q9NXL9	1143 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SMC3	Q9UQE7	1217 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	MYH15	Q9Y2K3	1946 aa		11.14	□□□□□ -0.63
PDLIM5-223	ENST00000627587	KLF18	A0A0U1RQI7	1052 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	MCM4	P33991	863 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	USP5	P45974	858 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	SEC23A	Q15436	765 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	RRP12	Q5JTH9	1297 aa	Known RBP	11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	APOA5	Q6Q788	366 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	MAPKAPK5	Q8IW41	473 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	CD99L2	Q8TCZ2	262 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	OPTN	Q96CV9	577 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	ZKSCAN3	Q9BRR0	538 aa		11.13	□□□□□ -0.63
PDLIM5-223	ENST00000627587	TDRD3	Q9H7E2	651 aa	Known RBP	11.13	□□□□□ -0.63

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