RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RNF20Q5VTR2 975 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 ZIC5Q96T25 663 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 CNNM2Q9H8M5 875 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 KANSL2Q9H9L4 492 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 INCENPQ9NQS7 918 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 PTPRFP10586 1907 aa22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 GREB1LQ9C091 1923 aaPredicted RBP22.61■■□□□ 1.21
SQSTM1-216ENST00000626660 CYP21A2P08686 494 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 GUCY1A2P33402 732 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 ICA1Q05084 483 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 FAM47AQ5JRC9 791 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 NEDD1Q8NHV4 660 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 ESR2Q92731 530 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 FEZ1Q99689 392 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 ARHGEF10LQ9HCE6 1279 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 TACC3Q9Y6A5 838 aa22.6■■□□□ 1.21
SQSTM1-216ENST00000626660 TRDNQ13061 729 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 PPP4R3BQ5MIZ7 849 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 MS4A4AQ96JQ5 239 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 KRT23Q9C075 422 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 SH2D4AQ9H788 454 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 PLIN4Q96Q06 1357 aa22.59■■□□□ 1.21
SQSTM1-216ENST00000626660 NEDD4P46934 1319 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 C19orf81C9J6K1 198 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 USP17L10C9JJH3 530 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 SLC27A2O14975 620 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 BACE1P56817 501 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 ATP2B2Q01814 1243 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 MAP2K1Q02750 393 aaPredicted RBP22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 CREB3L3Q68CJ9 461 aa22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 FASTKD5Q7L8L6 764 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-216ENST00000626660 A0A0G2JLL6 359 aaPredicted RBP22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 EPB41L2O43491 1005 aaKnown RBP22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 TM4SF4P48230 202 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 MTMR2Q13614 643 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 NECTIN1Q15223 517 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 OTUD7BQ6GQQ9 843 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 GADL1Q6ZQY3 521 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 PRRT2Q7Z6L0 340 aaPredicted RBP22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 BRI3BPQ8WY22 251 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 TMOD4Q9NZQ9 345 aa22.57■■□□□ 1.2
SQSTM1-216ENST00000626660 TESPA1A2RU30 521 aaPredicted RBP22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 ZKSCAN1P17029 563 aaPredicted RBP22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 USP14P54578 494 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 HMGCS2P54868 508 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 RALYLQ86SE5 291 aaKnown RBP22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 CLEC10AQ8IUN9 316 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 ACER1Q8TDN7 264 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 BEGAINQ9BUH8 593 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 MYH4Q9Y623 1939 aa22.56■■□□□ 1.2
SQSTM1-216ENST00000626660 IGKV6D-41A0A0C4DH26 115 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 B4E1Z4 1266 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 E7EWF7 191 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 KDM4AO75164 1064 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 EEF2P13639 858 aaKnown RBP22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 SH3D19Q5HYK7 790 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 USP17L2Q6R6M4 530 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 PROCA1Q8NCQ7 364 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 CEP95Q96GE4 821 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 KIAA1683Q9H0B3 1180 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 MTMR4Q9NYA4 1195 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 NYAP2Q9P242 653 aa22.55■■□□□ 1.2
SQSTM1-216ENST00000626660 TTLL1O95922 423 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 MCCP23508 829 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 LBX1P52954 281 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 ZYXQ15942 572 aaKnown RBP22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 CCDC178Q5BJE1 867 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 IQCA1Q86XH1 822 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 IFNL1Q8IU54 200 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 NCOA7Q8NI08 942 aa22.54■■□□□ 1.2
SQSTM1-216ENST00000626660 LOC285556D6RIA3 1793 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 ALDH1A1P00352 501 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 ANKRD23Q86SG2 305 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 TCP11L1Q9NUJ3 509 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 WBP1LQ9NX94 342 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 CLIP2Q9UDT6 1046 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 TMX2Q9Y320 296 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 TAF6LQ9Y6J9 622 aa22.53■■□□□ 1.2
SQSTM1-216ENST00000626660 A0A1W2PRG0 241 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 BTBD19C9JJ37 291 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 IGF2BP3O00425 579 aaKnown RBP eCLIP22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 KRT32Q14532 448 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 SIAH1Q8IUQ4 282 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 GOPCQ9HD26 462 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 ZCCHC17Q9NP64 241 aaKnown RBP22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 STX8Q9UNK0 236 aa22.52■■□□□ 1.2
SQSTM1-216ENST00000626660 NMT2O60551 498 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 HSPA4P34932 840 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 PABPC4Q13310 644 aaKnown RBP eCLIP22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 MOGSQ13724 837 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 STOX1Q6ZVD7 989 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 C12orf42Q96LP6 360 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 PTPN18Q99952 460 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 UBAC1Q9BSL1 405 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 USP26Q9BXU7 913 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 IL17RBQ9NRM6 502 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 ZSWIM5Q9P217 1185 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 AGTPBP1Q9UPW5 1226 aa22.51■■□□□ 1.19
SQSTM1-216ENST00000626660 C8orf34Q49A92 452 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms