RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TNNI2P48788 182 aa18.02■□□□□ 0.48
CPSF1-213ENST00000620219 ANO6Q4KMQ2 910 aa18.02■□□□□ 0.48
CPSF1-213ENST00000620219 IL17RAQ96F46 866 aa18.02■□□□□ 0.48
CPSF1-213ENST00000620219 HPS5Q9UPZ3 1129 aa18.02■□□□□ 0.48
CPSF1-213ENST00000620219 ESPNB1AK53 854 aa18.02■□□□□ 0.48
CPSF1-213ENST00000620219 TTLL12Q14166 644 aaPredicted RBP18.02■□□□□ 0.48
CPSF1-213ENST00000620219 NAT10Q9H0A0 1025 aaKnown RBP18.02■□□□□ 0.48
CPSF1-213ENST00000620219 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.02■□□□□ 0.483e-7■■□□□ 13.9
CPSF1-213ENST00000620219 SLC16A2P36021 539 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 AFMP43652 599 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 SMARCC2Q8TAQ2 1214 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 ZNF830Q96NB3 372 aaPredicted RBP18.02■□□□□ 0.47
CPSF1-213ENST00000620219 PCP11498 1178 aaKnown RBP18.02■□□□□ 0.47
CPSF1-213ENST00000620219 ZNF76P36508 570 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 KLHL10Q6JEL2 608 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 LUZP1Q86V48 1076 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 PLIN2Q99541 437 aa18.02■□□□□ 0.47
CPSF1-213ENST00000620219 NWD2Q9ULI1 1742 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 KIF23Q02241 960 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-213ENST00000620219 STYK1Q6J9G0 422 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 CCDC148Q8NFR7 591 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 CCDC12Q8WUD4 166 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-213ENST00000620219 CEP95Q96GE4 821 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 CLIC6Q96NY7 704 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 FMNL1O95466 1100 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-213ENST00000620219 NFIAQ12857 509 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 NOSTRINQ8IVI9 506 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 VWA3AA6NCI4 1184 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 LETM2Q2VYF4 491 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 KCTD1Q719H9 257 aa18.01■□□□□ 0.47
CPSF1-213ENST00000620219 ZNF165P49910 485 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 TYRO3Q06418 890 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 TRMT1LQ7Z2T5 733 aaKnown RBP18■□□□□ 0.47
CPSF1-213ENST00000620219 CEP57L1Q8IYX8 460 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 PGBD1Q96JS3 809 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 CAMKK2Q96RR4 588 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 TMEM47Q9BQJ4 181 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 SLURP2P0DP57 97 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 CDC42EP5Q6NZY7 148 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 SGMS1Q86VZ5 419 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 SMC2O95347 1197 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 SCG2P13521 617 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 CALML3P27482 149 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 HSP90AA4PQ58FG1 418 aa18■□□□□ 0.47
CPSF1-213ENST00000620219 RTFDC1Q9BY42 306 aaPredicted RBP18■□□□□ 0.47
CPSF1-213ENST00000620219 DDAH1O94760 285 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 ADCY5O95622 1261 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 TOP1P11387 765 aaKnown RBP17.99■□□□□ 0.47
CPSF1-213ENST00000620219 PPP2R5BQ15173 497 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 STAG2Q8N3U4 1231 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 DHX58Q96C10 678 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 C6orf50Q9HD87 102 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 TCEAL9Q9UHQ7 104 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 PCDHA7Q9UN72 937 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 PCDHAC2Q9Y5I4 1007 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 GPR75-ASB3A0A0A6YYF3 556 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 IL1R1P14778 569 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 USH1GQ495M9 461 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 RILPL1Q5EBL4 403 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 STRIP1Q5VSL9 837 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 ZHX3Q9H4I2 956 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 TAF1P21675 1872 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 TJP1Q07157 1748 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 ICA1Q05084 483 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 CIAPIN1Q6FI81 312 aa17.99■□□□□ 0.47
CPSF1-213ENST00000620219 NUP188Q5SRE5 1749 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 AKR1B1P15121 316 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 PODXL2Q9NZ53 605 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 ZNF384Q8TF68 577 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 RGS17Q9UGC6 210 aaPredicted RBP17.98■□□□□ 0.47
CPSF1-213ENST00000620219 KIF28PB7ZC32 967 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 ABCB5Q2M3G0 1257 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 TBC1D10BQ4KMP7 808 aaPredicted RBP17.98■□□□□ 0.47
CPSF1-213ENST00000620219 KRI1Q8N9T8 703 aaKnown RBP17.98■□□□□ 0.47
CPSF1-213ENST00000620219 OXER1Q8TDS5 423 aa17.98■□□□□ 0.47
CPSF1-213ENST00000620219 RNF26Q9BY78 433 aaPredicted RBP17.98■□□□□ 0.47
CPSF1-213ENST00000620219 UBA7P41226 1012 aa17.97■□□□□ 0.47
CPSF1-213ENST00000620219 CERS5Q8N5B7 392 aa17.97■□□□□ 0.47
CPSF1-213ENST00000620219 PI4KBQ9UBF8 816 aa17.97■□□□□ 0.47
CPSF1-213ENST00000620219 PSMD14O00487 310 aa17.97■□□□□ 0.47
CPSF1-213ENST00000620219 BIN2Q9UBW5 565 aaPredicted RBP17.97■□□□□ 0.47
CPSF1-213ENST00000620219 NRDCO43847 1150 aa17.97■□□□□ 0.47
CPSF1-213ENST00000620219 FAM160A1Q05DH4 1040 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.96■□□□□ 0.474e-6■■■■■ 36.3
CPSF1-213ENST00000620219 RRAGDQ9NQL2 400 aaPredicted RBP17.96■□□□□ 0.47
CPSF1-213ENST00000620219 BTAF1O14981 1849 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 USP17L5A8MUK1 530 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 ORC4O43929 436 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 STAMQ92783 540 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 ANO10Q9NW15 660 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 WDR19Q8NEZ3 1342 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 SMCO2A6NFE2 343 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 TTC38Q5R3I4 469 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 DGKHQ86XP1 1220 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 PIGSQ96S52 555 aa17.96■□□□□ 0.47
CPSF1-213ENST00000620219 TMTC3Q6ZXV5 915 aa17.96■□□□□ 0.46
CPSF1-213ENST00000620219 SLC16A10Q8TF71 515 aa17.96■□□□□ 0.46
CPSF1-213ENST00000620219 RASA1P20936 1047 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 GNA11P29992 359 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 SNAP25P60880 206 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms