RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SEPT2Q15019 361 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 CCDC84Q86UT8 332 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-211ENST00000618700 WNK4Q96J92 1243 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 BACH2Q9BYV9 841 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 SNX14Q9Y5W7 946 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 USP17L5A8MUK1 530 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 FAM155AB1AL88 458 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-211ENST00000618700 B4E1Z4 1266 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 RANBP6O60518 1105 aaKnown RBP23.29■■□□□ 1.32
UPF3A-211ENST00000618700 TSPY3P0CV98 308 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 TSPY8P0CW00 308 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 MCCP23508 829 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 PPIL2Q13356 520 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 DEFB115Q30KQ5 88 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 SPRYD7Q5W111 196 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 OTUD5Q96G74 571 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 TBC1D2Q9BYX2 928 aa23.29■■□□□ 1.32
UPF3A-211ENST00000618700 KDM4AO75164 1064 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 ZBTB48P10074 688 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-211ENST00000618700 TRDNQ13061 729 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 KRT32Q14532 448 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 RAB3GAP1Q15042 981 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 MB21D2Q8IYB1 491 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-211ENST00000618700 JMYQ8N9B5 988 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 NCOA7Q8NI08 942 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 WDR18Q9BV38 432 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 AFG3L2Q9Y4W6 797 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 ZHX2Q9Y6X8 837 aa23.28■■□□□ 1.32
UPF3A-211ENST00000618700 THSD7BQ9C0I4 1608 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 ICA1Q05084 483 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 COL9A3Q14050 684 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-211ENST00000618700 ADCK5Q3MIX3 580 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 CYP4F22Q6NT55 531 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 RALYLQ86SE5 291 aaKnown RBP23.27■■□□□ 1.32
UPF3A-211ENST00000618700 CLEC10AQ8IUN9 316 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 CCDC102AQ96A19 550 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 CEP95Q96GE4 821 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 KANSL2Q9H9L4 492 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-211ENST00000618700 KCNH4Q9UQ05 1017 aa23.27■■□□□ 1.32
UPF3A-211ENST00000618700 IRF6O14896 467 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 NOVP48745 357 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 CYB5R4Q7L1T6 521 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 SIAH1Q8IUQ4 282 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 ZNF280CQ8ND82 737 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 IL17RAQ96F46 866 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 AS3MTQ9HBK9 375 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 IL17RBQ9NRM6 502 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 TCP11L1Q9NUJ3 509 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 MTMR4Q9NYA4 1195 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 ZSWIM5Q9P217 1185 aa23.26■■□□□ 1.31
UPF3A-211ENST00000618700 PTPRFP10586 1907 aa23.25■■□□□ 1.31
UPF3A-211ENST00000618700 NMT2O60551 498 aa23.25■■□□□ 1.31
UPF3A-211ENST00000618700 NYAP2Q9P242 653 aa23.25■■□□□ 1.31
UPF3A-211ENST00000618700 CXCL11O14625 94 aa23.24■■□□□ 1.31
UPF3A-211ENST00000618700 ANTXR2P58335 489 aa23.24■■□□□ 1.31
UPF3A-211ENST00000618700 ANAPC15P60006 121 aa23.24■■□□□ 1.31
UPF3A-211ENST00000618700 ACER1Q8TDN7 264 aa23.24■■□□□ 1.31
UPF3A-211ENST00000618700 CAPNS2Q96L46 248 aa23.24■■□□□ 1.31
UPF3A-211ENST00000618700 A0A1W2PRG0 241 aa23.23■■□□□ 1.31
UPF3A-211ENST00000618700 EEF2P13639 858 aaKnown RBP23.23■■□□□ 1.31
UPF3A-211ENST00000618700 SPP2Q13103 211 aa23.23■■□□□ 1.31
UPF3A-211ENST00000618700 PPP4R3BQ5MIZ7 849 aa23.23■■□□□ 1.31
UPF3A-211ENST00000618700 PAXIP1Q6ZW49 1069 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-211ENST00000618700 IQCA1Q86XH1 822 aa23.23■■□□□ 1.31
UPF3A-211ENST00000618700 NEK1Q96PY6 1258 aa23.23■■□□□ 1.31
UPF3A-211ENST00000618700 LOC285556D6RIA3 1793 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 TRIM75PA6NK02 468 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 TTLL1O95922 423 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 ECE1P42892 770 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 MKRN3Q13064 507 aaKnown RBP23.22■■□□□ 1.31
UPF3A-211ENST00000618700 RCSD1Q6JBY9 416 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 MS4A4AQ96JQ5 239 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 JAKMIP1Q96N16 626 aaKnown RBP23.22■■□□□ 1.31
UPF3A-211ENST00000618700 KIAA1683Q9H0B3 1180 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 ARHGEF10LQ9HCE6 1279 aa23.22■■□□□ 1.31
UPF3A-211ENST00000618700 A0A0G2JLL6 359 aaPredicted RBP23.21■■□□□ 1.31
UPF3A-211ENST00000618700 USP17L10C9JJH3 530 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 RBM25P49756 843 aaKnown RBP23.21■■□□□ 1.31
UPF3A-211ENST00000618700 VEGFBP49765 207 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 BACE1P56817 501 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 NOGQ13253 232 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 SNAPC2Q13487 334 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 MTMR2Q13614 643 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 SH3D19Q5HYK7 790 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 PRRT2Q7Z6L0 340 aaPredicted RBP23.21■■□□□ 1.31
UPF3A-211ENST00000618700 ZSCAN10Q96SZ4 725 aaPredicted RBP23.21■■□□□ 1.31
UPF3A-211ENST00000618700 ZKSCAN3Q9BRR0 538 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 MTA3Q9BTC8 594 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 SYNPO2Q9UMS6 1093 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 TMX2Q9Y320 296 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 TNKSO95271 1327 aa23.21■■□□□ 1.31
UPF3A-211ENST00000618700 MYH4Q9Y623 1939 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 WDR19Q8NEZ3 1342 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 WDR33Q9C0J8 1336 aaKnown RBP23.2■■□□□ 1.3
UPF3A-211ENST00000618700 HMGB1P09429 215 aaKnown RBP23.2■■□□□ 1.3
UPF3A-211ENST00000618700 MCM5P33992 734 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 SEC23AQ15436 765 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 CCDC178Q5BJE1 867 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 ENAHQ8N8S7 591 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms