RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ADGRA2Q96PE1 1338 aa19.19■□□□□ 0.66
BRCA1-228ENST00000618469 CYP2D7A0A087X1C5 515 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 GNRH1P01148 92 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 CYP2C8P10632 490 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 ABCB5Q2M3G0 1257 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 TREML2Q5T2D2 321 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 PROCA1Q8NCQ7 364 aaPredicted RBP19.18■□□□□ 0.66
BRCA1-228ENST00000618469 SLC44A5Q8NCS7 719 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 LRCH3Q96II8 777 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 WDR18Q9BV38 432 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 GABRQQ9UN88 632 aa19.18■□□□□ 0.66
BRCA1-228ENST00000618469 USP17L12C9JPN9 530 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 USP17L21D6R901 530 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 GJA8P48165 433 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 PRMT2P55345 433 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 PRKCZQ05513 592 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 RAB3GAP1Q15042 981 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 UBE2Q1Q7Z7E8 422 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 EVI5LQ96CN4 794 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 DYNLL2Q96FJ2 89 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 HTATIP2Q9BUP3 242 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 UNC93B1Q9H1C4 597 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 PRO3102Q9H379 93 aa19.17■□□□□ 0.66
BRCA1-228ENST00000618469 ARPP21Q9UBL0 812 aaPredicted RBP19.17■□□□□ 0.66
BRCA1-228ENST00000618469 SMIM22K7EJ46 135 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 FARP2O94887 1054 aaPredicted RBP19.16■□□□□ 0.66
BRCA1-228ENST00000618469 GJB1P08034 283 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 C12orf60Q5U649 245 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 SEC62Q99442 399 aaKnown RBP19.16■□□□□ 0.66
BRCA1-228ENST00000618469 FEZ1Q99689 392 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 EPB41L4AQ9HCS5 686 aaPredicted RBP19.16■□□□□ 0.66
BRCA1-228ENST00000618469 CABP5Q9NP86 173 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 SWAP70Q9UH65 585 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 SLC45A1Q9Y2W3 748 aa19.16■□□□□ 0.66
BRCA1-228ENST00000618469 COL6A3P12111 3177 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 GSG1L2A8MUP6 293 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 MPHOSPH10O00566 681 aaKnown RBP19.15■□□□□ 0.66
BRCA1-228ENST00000618469 GNAT2P19087 354 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 HOXD10P28358 340 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 BACE1P56817 501 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 SH3D19Q5HYK7 790 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 ZMYM1Q5SVZ6 1142 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 CTR9Q6PD62 1173 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 SMCR8Q8TEV9 937 aaPredicted RBP19.15■□□□□ 0.66
BRCA1-228ENST00000618469 U2AF1L4Q8WU68 220 aaKnown RBP19.15■□□□□ 0.66
BRCA1-228ENST00000618469 TMOD4Q9NZQ9 345 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 PNMA3Q9UL41 463 aa19.15■□□□□ 0.66
BRCA1-228ENST00000618469 TRIM6-TRIM34B2RNG4 842 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 USP17L10C9JJH3 530 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 ELNP15502 786 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 TDO2P48775 406 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 ZYXQ15942 572 aaKnown RBP19.14■□□□□ 0.65
BRCA1-228ENST00000618469 PLEKHM2Q8IWE5 1019 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 NKX2-3Q8TAU0 364 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 TAOK2Q9UL54 1235 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 NR2E3Q9Y5X4 410 aa19.14■□□□□ 0.65
BRCA1-228ENST00000618469 APPP05067 770 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 UBXN2AP68543 259 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 PABPC4Q13310 644 aaKnown RBP eCLIP19.13■□□□□ 0.65
BRCA1-228ENST00000618469 SEPT2Q15019 361 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 GIMAP6Q6P9H5 292 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 C16orf86Q6ZW13 317 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 ROBO3Q96MS0 1386 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 ALPK3Q96L96 1907 aa19.13■□□□□ 0.65
BRCA1-228ENST00000618469 C19orf81C9J6K1 198 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 BCRP11274 1271 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 GUCY1A2P33402 732 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 CDK8P49336 464 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 CCDC129Q6ZRS4 1044 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 RILPL2Q969X0 211 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 DOCK3Q8IZD9 2030 aa19.12■□□□□ 0.65
BRCA1-228ENST00000618469 MINDY4BA8MYZ0 360 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 EVI5O60447 810 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 TFRCP02786 760 aaKnown RBP19.11■□□□□ 0.65
BRCA1-228ENST00000618469 AKR1B1P15121 316 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 SBK1Q52WX2 424 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 USP17L2Q6R6M4 530 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 TMEM179Q6ZVK1 233 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 STK11IPQ8N1F8 1099 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 ACER1Q8TDN7 264 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 NACAP1Q9BZK3 213 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 OSBPL3Q9H4L5 887 aa19.11■□□□□ 0.65
BRCA1-228ENST00000618469 GREB1LQ9C091 1923 aaPredicted RBP19.11■□□□□ 0.65
BRCA1-228ENST00000618469 A0A0D9SFI3 127 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 ADCY3O60266 1144 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 SGPL1O95470 568 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 FCGRTP55899 365 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 IRX3P78415 501 aaPredicted RBP19.1■□□□□ 0.65
BRCA1-228ENST00000618469 CLEC10AQ8IUN9 316 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 DEFB118Q96PH6 123 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 ASCC2Q9H1I8 757 aaPredicted RBP19.1■□□□□ 0.65
BRCA1-228ENST00000618469 EMILIN3Q9NT22 766 aa19.1■□□□□ 0.65
BRCA1-228ENST00000618469 PATL2C9JE40 543 aaKnown RBP19.09■□□□□ 0.65
BRCA1-228ENST00000618469 USP14P54578 494 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 IFNL3Q8IZI9 196 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 ANKRD13CQ8N6S4 541 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 FAM227BQ96M60 508 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 KIAA1683Q9H0B3 1180 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 NAPBQ9H115 298 aa19.09■□□□□ 0.65
BRCA1-228ENST00000618469 INHAP05111 366 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms