RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NECAB1Q8N987 351 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 TMOD3Q9NYL9 352 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 RTEL1Q9NZ71 1219 aa11.52□□□□□ -0.57
VPS39-214ENST00000614932 RBM8AQ9Y5S9 174 aaKnown RBP11.52□□□□□ -0.57
VPS39-214ENST00000614932 COL5A2P05997 1499 aaPredicted RBP11.52□□□□□ -0.57
VPS39-214ENST00000614932 ERICH2A1L162 156 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 FMNL1O95466 1100 aaPredicted RBP11.51□□□□□ -0.57
VPS39-214ENST00000614932 TNNI3KQ59H18 835 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 CCDC178Q5BJE1 867 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 RUFY3Q7L099 469 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 CCDC83Q8IWF9 413 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 CCDC13Q8IYE1 715 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 SCLT1Q96NL6 688 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 EPAS1Q99814 870 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 SLX1AQ9BQ83 275 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 PUS3Q9BZE2 481 aaKnown RBP11.51□□□□□ -0.57
VPS39-214ENST00000614932 IFNKQ9P0W0 207 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 PCDHGC5Q9Y5F6 944 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 FPGT-TNNI3KV9GXZ4 949 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 GRIN2DO15399 1336 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 N4BP2Q86UW6 1770 aaPredicted RBP11.51□□□□□ -0.57
VPS39-214ENST00000614932 TUBGCP6Q96RT7 1819 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 ADAMTS2O95450 1211 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 GNGT1P63211 74 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 RUFY2Q8WXA3 655 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 FAM89AQ96GI7 184 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 EHD4Q9H223 541 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 RABEP2Q9H5N1 569 aa11.51□□□□□ -0.57
VPS39-214ENST00000614932 PUF60Q9UHX1 559 aaKnown RBP11.51□□□□□ -0.57
VPS39-214ENST00000614932 NDUFAB1O14561 156 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 TPD52L2O43399 206 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 ZNF202O95125 648 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 PAPOLAP51003 745 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 ARHGAP22Q7Z5H3 698 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 LEO1Q8WVC0 666 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 PIGBQ92521 554 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 TTC14Q96N46 770 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 YIPF3Q9GZM5 350 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 BIN2Q9UBW5 565 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 CORO1CQ9ULV4 474 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 USP42Q9H9J4 1324 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 GOLGA6CA6NDK9 693 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 SMNDC1O75940 238 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS39-214ENST00000614932 GOLGA6DP0CG33 693 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 ROR2Q01974 943 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 CYB5D1Q6P9G0 228 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 BZW1Q7L1Q6 419 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 TRIM42Q8IWZ5 723 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 CCDC12Q8WUD4 166 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 RANBP17Q9H2T7 1088 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 CWC25Q9NXE8 425 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 GOLGA6AQ9NYA3 693 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 TRPC6Q9Y210 931 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 XIRP1Q702N8 1843 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 LMTK3Q96Q04 1460 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 GOLGA6L7A0A1B0GV03 622 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 RBM47A0AV96 593 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 MYL1P05976 194 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 RHOXF2BP0C7M4 288 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 ALDH1B1P30837 517 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 FOXO4P98177 505 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 STK3Q13188 491 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 DBN1Q16643 649 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 TRIM58Q8NG06 486 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 FAM163AQ96GL9 167 aaPredicted RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 ALS2CR12Q96Q35 445 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 SPAG5Q96R06 1193 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 RHOXF2Q9BQY4 288 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 LZTS2Q9BRK4 669 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 PAGR1Q9BTK6 254 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 TPX2Q9ULW0 747 aaKnown RBP11.5□□□□□ -0.57
VPS39-214ENST00000614932 HPCAL4Q9UM19 191 aa11.5□□□□□ -0.57
VPS39-214ENST00000614932 A6NNZ2 444 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 GCLCP48506 637 aaPredicted RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 CASP7P55210 303 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 DRP2Q13474 957 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 TUBB8Q3ZCM7 444 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 CREB3L3Q68CJ9 461 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 PROCA1Q8NCQ7 364 aaPredicted RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 PICK1Q9NRD5 415 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 ERVV-2B6SEH9 535 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 ARHGAP6O43182 974 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 PPFIA3O75145 1194 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 IFFO1Q0D2I5 559 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 RASA3Q14644 834 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 RRP12Q5JTH9 1297 aaKnown RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 RNF187Q5TA31 235 aaPredicted RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 FAM173BQ6P4H8 233 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 FERMT3Q86UX7 667 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 CCDC47Q96A33 483 aaKnown RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 CCDC114Q96M63 670 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 IQCGQ9H095 443 aaKnown RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 COPRSQ9NQ92 184 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 SNRKQ9NRH2 765 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 TFIP11Q9UBB9 837 aaKnown RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 CDC23Q9UJX2 597 aa11.49□□□□□ -0.57
VPS39-214ENST00000614932 U3KPZ7 1027 aaPredicted RBP11.49□□□□□ -0.57
VPS39-214ENST00000614932 FERP16591 822 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 ATP5JP18859 108 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 SF3B2Q13435 895 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms