RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 DDX49Q9Y6V7 483 aaKnown RBP6.84□□□□□ -1.31
CPNE3-208ENST00000614678 ERC2O15083 957 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 HLA-DOAP06340 250 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 RASA1P20936 1047 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 BACE1P56817 501 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 GPATCH3Q96I76 525 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 ASCC2Q9H1I8 757 aaPredicted RBP6.84□□□□□ -1.31
CPNE3-208ENST00000614678 SAGE1Q9NXZ1 904 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 FGAP02671 866 aa6.84□□□□□ -1.32
CPNE3-208ENST00000614678 HSPD1P10809 573 aaKnown RBP6.84□□□□□ -1.32
CPNE3-208ENST00000614678 TDO2P48775 406 aa6.84□□□□□ -1.32
CPNE3-208ENST00000614678 TRIM34Q9BYJ4 488 aa6.84□□□□□ -1.32
CPNE3-208ENST00000614678 PTCH2Q9Y6C5 1203 aa6.84□□□□□ -1.32
CPNE3-208ENST00000614678 PRUNE2Q8WUY3 3088 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 FKTNO75072 461 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 SNAP25P60880 206 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 SP3Q02447 781 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 PTH1RQ03431 593 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 TRIM32Q13049 653 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 TBC1D10CQ8IV04 446 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 EVI5LQ96CN4 794 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 ZKSCAN3Q9BRR0 538 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 PORCNQ9H237 461 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 A0A0C4DFX4 3053 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 COL2A1P02458 1487 aaPredicted RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 EEF2P13639 858 aaKnown RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 VCAM1P19320 739 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 LACTBP83111 547 aaPredicted RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 TTC22Q5TAA0 569 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 C16orf86Q6ZW13 317 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 TTC6Q86TZ1 520 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 LRRC47Q8N1G4 583 aaKnown RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 HPS5Q9UPZ3 1129 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 RLFQ13129 1914 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 POTEFA5A3E0 1075 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 PATL2C9JE40 543 aaKnown RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 ELNP15502 786 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 PAGR1Q9BTK6 254 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 IL17RBQ9NRM6 502 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 ATP8A2Q9NTI2 1148 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 ZBTB47Q9UFB7 747 aaPredicted RBP6.83□□□□□ -1.32
CPNE3-208ENST00000614678 TAOK2Q9UL54 1235 aa6.83□□□□□ -1.32
CPNE3-208ENST00000614678 USP17L10C9JJH3 530 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 ASNSP08243 561 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 BCRP11274 1271 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 PSMC4P43686 418 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 PRKCZQ05513 592 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 MTFR1Q15390 333 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 EHD4Q9H223 541 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 CPVLQ9H3G5 476 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 OSBPL3Q9H4L5 887 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 BTBD7Q9P203 1132 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 RBPJLQ9UBG7 517 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 AGTPBP1Q9UPW5 1226 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 LOC285556D6RIA3 1793 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 CXCL11O14625 94 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 PPARAQ07869 468 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 RRP12Q5JTH9 1297 aaKnown RBP6.82□□□□□ -1.32
CPNE3-208ENST00000614678 ANKRD23Q86SG2 305 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 CEP95Q96GE4 821 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 FEZ1Q99689 392 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 EFCC1Q9HA90 598 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 ZFYVE28Q9HCC9 887 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 NEDD4P46934 1319 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 INHBEP58166 350 aa6.82□□□□□ -1.32
CPNE3-208ENST00000614678 SMCR8Q8TEV9 937 aaPredicted RBP6.82□□□□□ -1.32
CPNE3-208ENST00000614678 CNMDO75829 334 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 OSBPP22059 807 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 MCMDC2Q4G0Z9 681 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 CHST3Q7LGC8 479 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 CTU1Q7Z7A3 348 aaKnown RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 HOOK2Q96ED9 719 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 NAPBQ9H115 298 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 RPAP3Q9H6T3 665 aaPredicted RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 SENP2Q9HC62 589 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 ICA1Q05084 483 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 COL11A1P12107 1806 aaPredicted RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 BAZ2BQ9UIF8 2168 aaKnown RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 MGAMO43451 1857 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 DTNBO60941 627 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 TFAP4Q01664 338 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 WDR18Q9BV38 432 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 CFHR5Q9BXR6 569 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 CLIP2Q9UDT6 1046 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 GREB1LQ9C091 1923 aaPredicted RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 MYH4Q9Y623 1939 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 PLXNB2O15031 1838 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 UNCXA6NJT0 531 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 PTGS1P23219 599 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 SLC4A3P48751 1232 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 HERVK_113P62684 666 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 CCL14Q16627 93 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 FAM83BQ5T0W9 1011 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 ZSCAN25Q6NSZ9 544 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 MKNK2Q9HBH9 465 aa6.81□□□□□ -1.32
CPNE3-208ENST00000614678 GPHNQ9NQX3 736 aaPredicted RBP6.81□□□□□ -1.32
CPNE3-208ENST00000614678 FMNL1O95466 1100 aaPredicted RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 CHMLP26374 656 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 SH3D19Q5HYK7 790 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 ATG4CQ96DT6 458 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms