RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 GLI3P10071 1580 aa6.73□□□□□ -1.33
VRK3-222ENST00000601324 XRN1Q8IZH2 1706 aaKnown RBP6.73□□□□□ -1.33
VRK3-222ENST00000601324 COL22A1Q8NFW1 1626 aaPredicted RBP6.72□□□□□ -1.33
VRK3-222ENST00000601324 MEGF11A6BM72 1044 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 MINDY4BA8MYZ0 360 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 F8W735 103 aaPredicted RBP6.72□□□□□ -1.33
VRK3-222ENST00000601324 CAMK2GQ13555 558 aaPredicted RBP6.72□□□□□ -1.33
VRK3-222ENST00000601324 EXOSC6Q5RKV6 272 aaKnown RBP6.72□□□□□ -1.33
VRK3-222ENST00000601324 CCDC84Q86UT8 332 aaPredicted RBP6.72□□□□□ -1.33
VRK3-222ENST00000601324 TRIM42Q8IWZ5 723 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 ZNF654Q8IZM8 581 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 GAL3ST3Q96A11 431 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 TGIF2Q9GZN2 237 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 MIR1-1HGQ9H1L0 117 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 KCNQ5Q9NR82 932 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 PCDHB5Q9Y5E4 795 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 ABCC5O15440 1437 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 UNC13BO14795 1591 aa6.72□□□□□ -1.33
VRK3-222ENST00000601324 PF4P02776 101 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 EIF4A3P38919 411 aaKnown RBP6.71□□□□□ -1.34
VRK3-222ENST00000601324 RACK1P63244 317 aaKnown RBP6.71□□□□□ -1.34
VRK3-222ENST00000601324 KIF4BQ2VIQ3 1234 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 GPBAR1Q8TDU6 330 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 DCAF5Q96JK2 942 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 SUGCTQ9HAC7 445 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.71□□□□□ -1.34
VRK3-222ENST00000601324 NRXN3Q9Y4C0 1643 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 C1orf167Q5SNV9 1468 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 RPRD2Q5VT52 1461 aaKnown RBP6.71□□□□□ -1.34
VRK3-222ENST00000601324 SYNGAP1Q96PV0 1343 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 MYO5BQ9ULV0 1848 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 SLIT2O94813 1529 aa6.71□□□□□ -1.34
VRK3-222ENST00000601324 SPHKAPQ2M3C7 1700 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 ADGRL3Q9HAR2 1447 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 ZNF862O60290 1169 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 LIG1P18858 919 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 GARTP22102 1010 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 FAM160A1Q05DH4 1040 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 KCNMA1Q12791 1236 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 SEPT6Q14141 434 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 ADGRE1Q14246 886 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 MPRIPQ6WCQ1 1025 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 Q6ZS46 218 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 ACSBG1Q96GR2 724 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 WDR18Q9BV38 432 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 CCSER2Q9H7U1 834 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 AKTIPQ9H8T0 292 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 CYP4F12Q9HCS2 524 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 ADAMTS1Q9UHI8 967 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 RALGAPBQ86X10 1494 aa6.7□□□□□ -1.34
VRK3-222ENST00000601324 MYOM3Q5VTT5 1437 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 KRBA1A5PL33 1030 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 AOC2O75106 756 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 MBTPS1Q14703 1052 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 SNAP47Q5SQN1 464 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 NUTM2GQ5VZR2 741 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 DIEXFQ68CQ4 756 aaKnown RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 KIAA0825Q8IV33 1275 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 AGGF1Q8N302 714 aaeCLIP6.69□□□□□ -1.34
VRK3-222ENST00000601324 GOLM1Q8NBJ4 401 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 SMG8Q8ND04 991 aaKnown RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 ZNF296Q8WUU4 475 aaPredicted RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 WDR89Q96FK6 387 aaPredicted RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 SPON2Q9BUD6 331 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 RAD18Q9NS91 495 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 SUPT16HQ9Y5B9 1047 aaKnown RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.69□□□□□ -1.34
VRK3-222ENST00000601324 METP08581 1390 aa6.69□□□□□ -1.34
VRK3-222ENST00000601324 GCC2Q8IWJ2 1684 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 GREM1O60565 184 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 ALX3O95076 343 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 SLFN14P0C7P3 912 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 YY1P25490 414 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 NOS3P29474 1203 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 GSK3AP49840 483 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 RASSF7Q02833 373 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 PTPN11Q06124 597 aaPredicted RBP6.68□□□□□ -1.34
VRK3-222ENST00000601324 ANKRD34AQ69YU3 496 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 FDX2Q6P4F2 183 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 FBXL19Q6PCT2 694 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 BNC2Q6ZN30 1099 aaPredicted RBP6.68□□□□□ -1.34
VRK3-222ENST00000601324 FAM196AQ6ZSG2 479 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.68□□□□□ -1.34
VRK3-222ENST00000601324 WFDC12Q8WWY7 111 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 GATAD2BQ8WXI9 593 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 CEP41Q9BYV8 373 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 RRP7BPQ9NSQ0 103 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 PCDHA4Q9UN74 947 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 PCDHGC5Q9Y5F6 944 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 BRWD3Q6RI45 1802 aa6.68□□□□□ -1.34
VRK3-222ENST00000601324 TIAF1O95411 115 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 F13A1P00488 732 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 ADH5P11766 374 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 CHRNA4P43681 627 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 IREB2P48200 963 aaKnown RBP6.67□□□□□ -1.34
VRK3-222ENST00000601324 AKAP4Q5JQC9 854 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 TXNRD3Q86VQ6 643 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 JARID2Q92833 1246 aaPredicted RBP6.67□□□□□ -1.34
VRK3-222ENST00000601324 ORAI2Q96SN7 254 aa6.67□□□□□ -1.34
VRK3-222ENST00000601324 NT5C1AQ9BXI3 368 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms