RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TTF1Q15361 905 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-214ENST00000600840 SLFNL1Q499Z3 407 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 BMP2KLQ5H9B9 411 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 NECAB2Q7Z6G3 386 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 MIGA1Q8NAN2 632 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 EVI5LQ96CN4 794 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 DNAJC2Q99543 621 aaKnown RBP10.55□□□□□ -0.72
TRIM28-214ENST00000600840 AGTPBP1Q9UPW5 1226 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 IDH1O75874 414 aaKnown RBP10.54□□□□□ -0.72
TRIM28-214ENST00000600840 ADD2P35612 726 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 METTL16Q86W50 562 aaKnown RBP10.54□□□□□ -0.72
TRIM28-214ENST00000600840 ANKRD13CQ8N6S4 541 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 MAGEB6Q8N7X4 407 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 ZNF280CQ8ND82 737 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 UBE2OQ9C0C9 1292 aaKnown RBP10.54□□□□□ -0.72
TRIM28-214ENST00000600840 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.54□□□□□ -0.72
TRIM28-214ENST00000600840 PRDM6Q9NQX0 595 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 PI4KBQ9UBF8 816 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 SLC45A1Q9Y2W3 748 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 PLXNB2O15031 1838 aa10.54□□□□□ -0.72
TRIM28-214ENST00000600840 USP17L5A8MUK1 530 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 TNPO2O14787 897 aaKnown RBP10.53□□□□□ -0.72
TRIM28-214ENST00000600840 GDF11O95390 407 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 BAG3O95817 575 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 PDE6AP16499 860 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 UBE3CQ15386 1083 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 SH3D19Q5HYK7 790 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 TMED8Q6PL24 325 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-214ENST00000600840 POTEEQ6S8J3 1075 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 PXYLP1Q8TE99 480 aa10.53□□□□□ -0.72
TRIM28-214ENST00000600840 HERC5Q9UII4 1024 aaKnown RBP10.53□□□□□ -0.72
TRIM28-214ENST00000600840 RNF113AO15541 343 aaKnown RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 PLCG2P16885 1265 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 TRIM32Q13049 653 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 MTMR2Q13614 643 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 ZMYM1Q5SVZ6 1142 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 SLC9C2Q5TAH2 1124 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 FOXP4Q8IVH2 680 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 PROCA1Q8NCQ7 364 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 SMCR8Q8TEV9 937 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 OSBP2Q969R2 916 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 RIOK1Q9BRS2 568 aaKnown RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 NOL10Q9BSC4 688 aaKnown RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 ASCC2Q9H1I8 757 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 IL25Q9H293 177 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 DHX36Q9H2U1 1008 aaKnown RBP10.52□□□□□ -0.73
TRIM28-214ENST00000600840 RAPGEFL1Q9UHV5 662 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 A0A0C4DFX4 3053 aa10.52□□□□□ -0.73
TRIM28-214ENST00000600840 CHMLP26374 656 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 PLCD1P51178 756 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 BACE1P56817 501 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 MDM2Q00987 491 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-214ENST00000600840 MAP3K12Q12852 859 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 IRF5Q13568 498 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 SEC62Q99442 399 aaKnown RBP10.51□□□□□ -0.73
TRIM28-214ENST00000600840 P2RX7Q99572 595 aaKnown RBP10.51□□□□□ -0.73
TRIM28-214ENST00000600840 WDR18Q9BV38 432 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 PUS7LQ9H0K6 701 aaKnown RBP10.51□□□□□ -0.73
TRIM28-214ENST00000600840 TXNRD2Q9NNW7 524 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 PFASO15067 1338 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 ZNF532Q9HCE3 1301 aa10.51□□□□□ -0.73
TRIM28-214ENST00000600840 POTEB2H3BUK9 544 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 SMIM22K7EJ46 135 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 FOXP2O15409 715 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 ZFYP08048 801 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-214ENST00000600840 FAM110CQ1W6H9 321 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 CRACR2BQ8N4Y2 399 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-214ENST00000600840 RILPL2Q969X0 211 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 FAM227BQ96M60 508 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 NBPF3Q9H094 633 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 C11orf49Q9H6J7 331 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 EMILIN3Q9NT22 766 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 GJD2Q9UKL4 321 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 ZBTB21Q9ULJ3 1066 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 UNC80Q8N2C7 3258 aa10.5□□□□□ -0.73
TRIM28-214ENST00000600840 NAV1Q8NEY1 1877 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 A0A0D9SFI3 127 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 TRIM6-TRIM34B2RNG4 842 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 GH2P01242 217 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 ASNSP08243 561 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 COL9A1P20849 921 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 GUCY1A2P33402 732 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 USP5P45974 858 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 Q3C1V9 767 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 TATDN1Q6P1N9 297 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 ANKLE1Q8NAG6 615 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 APPBP2Q92624 585 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 STRBPQ96SI9 672 aaKnown RBP10.49□□□□□ -0.73
TRIM28-214ENST00000600840 FSD1Q9BTV5 496 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 AS3MTQ9HBK9 375 aa10.49□□□□□ -0.73
TRIM28-214ENST00000600840 BAZ2AQ9UIF9 1905 aaKnown RBP10.48□□□□□ -0.73
TRIM28-214ENST00000600840 USP17L10C9JJH3 530 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 M0R2C6 588 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 HLA-DOAP06340 250 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 CYP2D6P10635 497 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 HOXA7P31268 230 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-214ENST00000600840 SHMT1P34896 483 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 NMIQ13287 307 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-214ENST00000600840 ZYXQ15942 572 aaKnown RBP10.48□□□□□ -0.73
TRIM28-214ENST00000600840 ZSCAN25Q6NSZ9 544 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms