RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 ABCB5Q2M3G0 1257 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 FBXO46Q6PJ61 603 aaPredicted RBP10.54□□□□□ -0.72
SSBP4-208ENST00000600628 IFNL3Q8IZI9 196 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 CD99L2Q8TCZ2 262 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 PARK7Q99497 189 aaKnown RBP10.54□□□□□ -0.72
SSBP4-208ENST00000600628 AS3MTQ9HBK9 375 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 ANAPC4Q9UJX5 808 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 HPS5Q9UPZ3 1129 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 TRIM17Q9Y577 477 aa10.54□□□□□ -0.72
SSBP4-208ENST00000600628 KIAA0100Q14667 2235 aaKnown RBP10.54□□□□□ -0.72
SSBP4-208ENST00000600628 MYH4Q9Y623 1939 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 CYP2C8P10632 490 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 GSPT1P15170 499 aaKnown RBP10.53□□□□□ -0.72
SSBP4-208ENST00000600628 SEPT2Q15019 361 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 LBX2Q6XYB7 198 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 TMEM179Q6ZVK1 233 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 ZNF589Q86UQ0 364 aaPredicted RBP10.53□□□□□ -0.72
SSBP4-208ENST00000600628 ACER1Q8TDN7 264 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 FAM227BQ96M60 508 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 ASCC2Q9H1I8 757 aaPredicted RBP10.53□□□□□ -0.72
SSBP4-208ENST00000600628 MORF4L1Q9UBU8 362 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 ZBTB47Q9UFB7 747 aaPredicted RBP10.53□□□□□ -0.72
SSBP4-208ENST00000600628 TACC3Q9Y6A5 838 aa10.53□□□□□ -0.72
SSBP4-208ENST00000600628 GNRH1P01148 92 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 AKR1B1P15121 316 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 SDSP20132 328 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 NOVP48745 357 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 RGS19P49795 217 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 ARHGEF6Q15052 776 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 MCMDC2Q4G0Z9 681 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 KIAA1755Q5JYT7 1200 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 VPS53Q5VIR6 699 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 CCDC129Q6ZRS4 1044 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 TRIM47Q96LD4 638 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 TRIM34Q9BYJ4 488 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 ARHGAP39Q9C0H5 1083 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 EFCC1Q9HA90 598 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 PTPN22Q9Y2R2 807 aa10.52□□□□□ -0.73
SSBP4-208ENST00000600628 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.52□□□□□ -0.732e-6■■■□□ 14.9
SSBP4-208ENST00000600628 DNAH12Q6ZR08 3092 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 HSPD1P10809 573 aaKnown RBP10.51□□□□□ -0.73
SSBP4-208ENST00000600628 GCLCP48506 637 aaPredicted RBP10.51□□□□□ -0.73
SSBP4-208ENST00000600628 USP14P54578 494 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 NMIQ13287 307 aaPredicted RBP10.51□□□□□ -0.73
SSBP4-208ENST00000600628 FAM110CQ1W6H9 321 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 TTC22Q5TAA0 569 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L2Q6R6M4 530 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 GADL1Q6ZQY3 521 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 MKL1Q969V6 931 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 ARMC5Q96C12 935 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 IL25Q9H293 177 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 CPA4Q9UI42 421 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 TMX2Q9Y320 296 aa10.51□□□□□ -0.73
SSBP4-208ENST00000600628 FGAP02671 866 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 VCAM1P19320 739 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 PABPC4Q13310 644 aaKnown RBP eCLIP10.5□□□□□ -0.73
SSBP4-208ENST00000600628 KIF22Q14807 665 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 RAB3GAP1Q15042 981 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 CATSPERGQ6ZRH7 1159 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 DDRGK1Q96HY6 314 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 P2RX7Q99572 595 aaKnown RBP10.5□□□□□ -0.73
SSBP4-208ENST00000600628 NBPF3Q9H094 633 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 KANSL2Q9H9L4 492 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 CABP5Q9NP86 173 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 NYAP2Q9P242 653 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 RBPJLQ9UBG7 517 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 PNMA3Q9UL41 463 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 SYNPO2Q9UMS6 1093 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 ADAMTS5Q9UNA0 930 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 CCDC171Q6TFL3 1326 aa10.5□□□□□ -0.73
SSBP4-208ENST00000600628 COL11A1P12107 1806 aaPredicted RBP10.49□□□□□ -0.73
SSBP4-208ENST00000600628 ORC4O43929 436 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 CNMDO75829 334 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 PRMT2P55345 433 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 HERVK_113P62684 666 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 PPARAQ07869 468 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 CLEC10AQ8IUN9 316 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 AMOTL1Q8IY63 956 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 LPAR1Q92633 364 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 NACAP1Q9BZK3 213 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 VCPKMTQ9H867 229 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 TXNRD2Q9NNW7 524 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 SRRDQ9UH36 339 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 GJD2Q9UKL4 321 aa10.49□□□□□ -0.73
SSBP4-208ENST00000600628 TRIM6-TRIM34B2RNG4 842 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L15C9J2P7 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L13C9JLJ4 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L11C9JVI0 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L18D6R9N7 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L22D6RA61 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L17D6RBQ6 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L19D6RCP7 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 USP17L20D6RJB6 530 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 HIP1O00291 1037 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 IGHA2P01877 340 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 EEF2P13639 858 aaKnown RBP10.48□□□□□ -0.73
SSBP4-208ENST00000600628 PSMC4P43686 418 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 TDO2P48775 406 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 SOX10P56693 466 aa10.48□□□□□ -0.73
SSBP4-208ENST00000600628 ICA1Q05084 483 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms