RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 MKNK2Q9HBH9 465 aa18.14■□□□□ 0.49
LIG1-219ENST00000600055 EMILIN3Q9NT22 766 aa18.14■□□□□ 0.49
LIG1-219ENST00000600055 A0A1W2PRG0 241 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 C19orf81C9J6K1 198 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 TLR2O60603 784 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 CHMLP26374 656 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 SIAH1Q8IUQ4 282 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 FEZ1Q99689 392 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 INCENPQ9NQS7 918 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 TMOD4Q9NZQ9 345 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 CPA4Q9UI42 421 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 TACC3Q9Y6A5 838 aa18.13■□□□□ 0.49
LIG1-219ENST00000600055 PTPRFP10586 1907 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 MFAP1P55081 439 aaKnown RBP18.12■□□□□ 0.49
LIG1-219ENST00000600055 CAP1Q01518 475 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 USP17L2Q6R6M4 530 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 TNS4Q8IZW8 715 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 PARK7Q99497 189 aaKnown RBP18.12■□□□□ 0.49
LIG1-219ENST00000600055 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.12■□□□□ 0.49
LIG1-219ENST00000600055 SLC45A1Q9Y2W3 748 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 ADGRA2Q96PE1 1338 aa18.12■□□□□ 0.49
LIG1-219ENST00000600055 SP3Q02447 781 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 ICA1Q05084 483 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 C17orf99Q6UX52 265 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 CD99L2Q8TCZ2 262 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 KIAA1683Q9H0B3 1180 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 PPP4R2Q9NY27 417 aa18.11■□□□□ 0.49
LIG1-219ENST00000600055 ECM2O94769 699 aaPredicted RBP18.1■□□□□ 0.49
LIG1-219ENST00000600055 HAND2P61296 217 aa18.1■□□□□ 0.49
LIG1-219ENST00000600055 PDE4BQ07343 736 aa18.1■□□□□ 0.49
LIG1-219ENST00000600055 ZNF444Q8N0Y2 327 aaPredicted RBP18.1■□□□□ 0.49
LIG1-219ENST00000600055 ANAPC4Q9UJX5 808 aa18.1■□□□□ 0.49
LIG1-219ENST00000600055 LOC285556D6RIA3 1793 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 SLC3A2P08195 630 aaKnown RBP18.09■□□□□ 0.49
LIG1-219ENST00000600055 EEF2P13639 858 aaKnown RBP18.09■□□□□ 0.49
LIG1-219ENST00000600055 USP14P54578 494 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 ATP2B2Q01814 1243 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 FAM47AQ5JRC9 791 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 KIAA1755Q5JYT7 1200 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 ERICH6BQ5W0A0 696 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 CTU1Q7Z7A3 348 aaKnown RBP18.09■□□□□ 0.49
LIG1-219ENST00000600055 C12orf42Q96LP6 360 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 ASCC2Q9H1I8 757 aaPredicted RBP18.09■□□□□ 0.49
LIG1-219ENST00000600055 ZNF287Q9HBT7 754 aa18.09■□□□□ 0.49
LIG1-219ENST00000600055 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.09■□□□□ 0.49
LIG1-219ENST00000600055 ZMYM6O95789 1325 aa18.08■□□□□ 0.49
LIG1-219ENST00000600055 BCRP11274 1271 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 OSBPP22059 807 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 PABPC4Q13310 644 aaKnown RBP eCLIP18.08■□□□□ 0.48
LIG1-219ENST00000600055 SMCR8Q8TEV9 937 aaPredicted RBP18.08■□□□□ 0.48
LIG1-219ENST00000600055 ARHGAP39Q9C0H5 1083 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 MCOLN1Q9GZU1 580 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 NBPF3Q9H094 633 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 KANSL2Q9H9L4 492 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 ARHGEF10LQ9HCE6 1279 aa18.08■□□□□ 0.48
LIG1-219ENST00000600055 IGKV6D-41A0A0C4DH26 115 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 VCAM1P19320 739 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 HOXA7P31268 230 aaPredicted RBP18.07■□□□□ 0.48
LIG1-219ENST00000600055 TFAP4Q01664 338 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 RUFY2Q8WXA3 655 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 ERO1AQ96HE7 468 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 P2RX7Q99572 595 aaKnown RBP18.07■□□□□ 0.48
LIG1-219ENST00000600055 DSCC1Q9BVC3 393 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 PNMA3Q9UL41 463 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 TMX2Q9Y320 296 aa18.07■□□□□ 0.48
LIG1-219ENST00000600055 MYH8P13535 1937 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 RAD50Q92878 1312 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 TSPY3P0CV98 308 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 TSPY8P0CW00 308 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 CTGFP29279 349 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 IRX3P78415 501 aaPredicted RBP18.06■□□□□ 0.48
LIG1-219ENST00000600055 BMP2KLQ5H9B9 411 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 TBC1D10CQ8IV04 446 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 SPICE1Q8N0Z3 855 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 ANKRD13CQ8N6S4 541 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 RPAP3Q9H6T3 665 aaPredicted RBP18.06■□□□□ 0.48
LIG1-219ENST00000600055 TRIM17Q9Y577 477 aa18.06■□□□□ 0.48
LIG1-219ENST00000600055 SGSM2O43147 1006 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 PEX10O60683 326 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 FGRP09769 529 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 LACTBP83111 547 aaPredicted RBP18.05■□□□□ 0.48
LIG1-219ENST00000600055 PTH1RQ03431 593 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 RRP12Q5JTH9 1297 aaKnown RBP18.05■□□□□ 0.48
LIG1-219ENST00000600055 OTOP1Q7RTM1 612 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 NEDD1Q8NHV4 660 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 NKX2-3Q8TAU0 364 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 CEP95Q96GE4 821 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 VCPKMTQ9H867 229 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 TOMM22Q9NS69 142 aa18.05■□□□□ 0.48
LIG1-219ENST00000600055 TSPY2A6NKD2 308 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L15C9J2P7 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L13C9JLJ4 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L11C9JVI0 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L18D6R9N7 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L22D6RA61 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L17D6RBQ6 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L19D6RCP7 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L20D6RJB6 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 ZNF213O14771 459 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 ORC4O43929 436 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms