RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 DGKHQ86XP1 1220 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 FAM184AQ8NB25 1140 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 FANCBQ8NB91 859 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 ANKS1AQ92625 1134 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 DPF2Q92785 391 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 DNAJC18Q9H819 358 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 RCAN1P53805 252 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 TROAPQ12815 778 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 RTN1Q16799 776 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 MICALL2Q8IY33 904 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 CHAMP1Q96JM3 812 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 NAP1L5Q96NT1 182 aaPredicted RBP17.66■□□□□ 0.42
VRK3-218ENST00000600031 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.66■□□□□ 0.42
VRK3-218ENST00000600031 CNOT7Q9UIV1 285 aaKnown RBP17.66■□□□□ 0.42
VRK3-218ENST00000600031 ATRNL1Q5VV63 1379 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 VPS37CA5D8V6 355 aaPredicted RBP17.66■□□□□ 0.42
VRK3-218ENST00000600031 FAM196BA6NMK8 535 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 AKR1B1P15121 316 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 RBM26Q5T8P6 1007 aaKnown RBP17.66■□□□□ 0.42
VRK3-218ENST00000600031 GPT2Q8TD30 523 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 VEZTQ9HBM0 779 aa17.66■□□□□ 0.42
VRK3-218ENST00000600031 CNTNAP1P78357 1384 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 MYH8P13535 1937 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 MMP14P50281 582 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 CCDC178Q5BJE1 867 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 CDC37L1Q7L3B6 337 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 CRACR2BQ8N4Y2 399 aaPredicted RBP17.65■□□□□ 0.42
VRK3-218ENST00000600031 PHKBQ93100 1093 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 ORC3Q9UBD5 711 aaPredicted RBP17.65■□□□□ 0.42
VRK3-218ENST00000600031 HS1BP3Q53T59 392 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 SAMD7Q7Z3H4 446 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 FAM151AQ8WW52 585 aa17.65■□□□□ 0.42
VRK3-218ENST00000600031 COL2A1P02458 1487 aaPredicted RBP17.64■□□□□ 0.42
VRK3-218ENST00000600031 MYO1BO43795 1136 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 DDAH1O94760 285 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 FOSBP53539 338 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 FKBP1CQ5VVH2 108 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 CPLX2Q6PUV4 134 aaKnown RBP17.64■□□□□ 0.41
VRK3-218ENST00000600031 FOXP4Q8IVH2 680 aaPredicted RBP17.64■□□□□ 0.41
VRK3-218ENST00000600031 CMTR1Q8N1G2 835 aaKnown RBP17.64■□□□□ 0.41
VRK3-218ENST00000600031 CEP95Q96GE4 821 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 KAT14Q9H8E8 782 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 STX8Q9UNK0 236 aa17.64■□□□□ 0.41
VRK3-218ENST00000600031 CDKL5O76039 1030 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 F13A1P00488 732 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 TBC1D10BQ4KMP7 808 aaPredicted RBP17.63■□□□□ 0.41
VRK3-218ENST00000600031 ZSCAN30Q86W11 494 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 METTL16Q86W50 562 aaKnown RBP17.63■□□□□ 0.41
VRK3-218ENST00000600031 CSRNP1Q96S65 589 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 TMEM47Q9BQJ4 181 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 PLIN4Q96Q06 1357 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 CCDC196A0A1B0GTZ2 297 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 CALM1P0DP23 149 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 CALM2P0DP24 149 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 CALM3P0DP25 149 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 PDIA4P13667 645 aaKnown RBP17.63■□□□□ 0.41
VRK3-218ENST00000600031 IFNAR1P17181 557 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 NOVP48745 357 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 FOXD4L6Q3SYB3 417 aaPredicted RBP17.63■□□□□ 0.41
VRK3-218ENST00000600031 LRSAM1Q6UWE0 723 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 FOXD4L3Q6VB84 417 aaPredicted RBP17.63■□□□□ 0.41
VRK3-218ENST00000600031 PNMA1Q8ND90 353 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 KIF3AQ9Y496 699 aa17.63■□□□□ 0.41
VRK3-218ENST00000600031 IGKV6D-41A0A0C4DH26 115 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 CCDC82Q8N4S0 544 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 RBSNQ9H1K0 784 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 RNF181Q9P0P0 153 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 SCAF8Q9UPN6 1271 aaKnown RBP17.62■□□□□ 0.41
VRK3-218ENST00000600031 UBE2Q2LH0YL09 131 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 PPP2R5BQ15173 497 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 TATDN1Q6P1N9 297 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 NBPF11Q86T75 865 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 FAM83AQ86UY5 434 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 CDAN1Q8IWY9 1227 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 GPC2Q8N158 579 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 TRIM34Q9BYJ4 488 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 TMEM39BQ9GZU3 492 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 MTMR4Q9NYA4 1195 aa17.62■□□□□ 0.41
VRK3-218ENST00000600031 ASTN2O75129 1339 aaPredicted RBP17.62■□□□□ 0.41
VRK3-218ENST00000600031 H3BQV1 296 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 SHROOM1Q2M3G4 852 aaPredicted RBP17.61■□□□□ 0.41
VRK3-218ENST00000600031 IFFO2Q5TF58 517 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 FERMT3Q86UX7 667 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 CLEC10AQ8IUN9 316 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 AIFM3Q96NN9 605 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 SLC26A6Q9BXS9 759 aa17.61■□□□□ 0.41
VRK3-218ENST00000600031 PLEKHA8P1O95397 391 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 FMNL1O95466 1100 aaPredicted RBP17.6■□□□□ 0.41
VRK3-218ENST00000600031 GUCY1B3Q02153 619 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 SSRP1Q08945 709 aaKnown RBP17.6■□□□□ 0.41
VRK3-218ENST00000600031 KIF4BQ2VIQ3 1234 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 CERKLQ49MI3 558 aaPredicted RBP17.6■□□□□ 0.41
VRK3-218ENST00000600031 CCDC17Q96LX7 622 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 GJB4Q9NTQ9 266 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 RBM28Q9NW13 759 aaKnown RBP17.6■□□□□ 0.41
VRK3-218ENST00000600031 GPRC5DQ9NZD1 345 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 TMEM63CQ9P1W3 806 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 RBM27Q9P2N5 1060 aaKnown RBP17.6■□□□□ 0.41
VRK3-218ENST00000600031 PGAP2Q9UHJ9 254 aa17.6■□□□□ 0.41
VRK3-218ENST00000600031 TAOK2Q9UL54 1235 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms