RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 C11orf49Q9H6J7 331 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 AS3MTQ9HBK9 375 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 EMILIN3Q9NT22 766 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 TMOD4Q9NZQ9 345 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 HERC5Q9UII4 1024 aaKnown RBP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 EPG5Q9HCE0 2579 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 MYH1P12882 1939 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 GH2P01242 217 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 UQCRFS1P1P0C7P4 283 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 CYP7A1P22680 504 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 ALYREFQ86V81 257 aaKnown RBP10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 GPRC5AQ8NFJ5 357 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 MYLIPQ8WY64 445 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 TRIM34Q9BYJ4 488 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 NBPF3Q9H094 633 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 BCL11AQ9H165 835 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 SEMA6BQ9H3T3 888 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 ANTXR1Q9H6X2 564 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 DBNLQ9UJU6 430 aaKnown RBP10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 WDFY4Q6ZS81 3184 aa10.6□□□□□ -0.71
SHKBP1-220ENST00000599716 SPTBN4Q9H254 2564 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 USP17L10C9JJH3 530 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 SURF6O75683 361 aaKnown RBP10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 CNMDO75829 334 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 IDH1O75874 414 aaKnown RBP10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 BAG3O95817 575 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ASNSP08243 561 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 PPP4CP60510 307 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ERVK-9P63128 1117 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ERVK-24P63145 666 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 MDM2Q00987 491 aaPredicted RBP10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 POLA2Q14181 598 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 LRRC26Q2I0M4 334 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 MAP3K21Q5TCX8 1036 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 WDR78Q5VTH9 848 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 GPR142Q7Z601 462 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ANKLE1Q8NAG6 615 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ACER1Q8TDN7 264 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 ADAMTS19Q8TE59 1207 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 NUDT12Q9BQG2 462 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 FLRT1Q9NZU1 646 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 OGDHLQ9ULD0 1010 aa10.59□□□□□ -0.71
SHKBP1-220ENST00000599716 FRMPD3Q5JV73 1810 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 USP34Q70CQ2 3546 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 RLBP1P12271 317 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 ZKSCAN1P17029 563 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 HOXA7P31268 230 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 RAB3GAP1Q15042 981 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 CCDC158Q5M9N0 1113 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 LHX8Q68G74 356 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 CCAR1Q8IX12 1150 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 ATXN2LQ8WWM7 1075 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 USP6NLQ92738 828 aa10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 EAF2Q96CJ1 260 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 UHRF1Q96T88 793 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 DHX36Q9H2U1 1008 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-220ENST00000599716 IPO8O15397 1037 aaKnown RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 MAP4K4O95819 1239 aaPredicted RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 PLCD1P51178 756 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 ATN1P54259 1190 aaPredicted RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 ATP8B2P98198 1209 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 PDE3AQ14432 1141 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 MORN1Q5T089 497 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 ANO1Q5XXA6 986 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 PLEKHH3Q7Z736 793 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 METTL16Q86W50 562 aaKnown RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 FOXP4Q8IVH2 680 aaPredicted RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 MAGEB6Q8N7X4 407 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 SSH3Q8TE77 659 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 FEZ1Q99689 392 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 TBC1D2Q9BYX2 928 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 CWC22Q9HCG8 908 aaKnown RBP10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 BTBD7Q9P203 1132 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 C5orf42Q9H799 3197 aa10.57□□□□□ -0.72
SHKBP1-220ENST00000599716 C19orf81C9J6K1 198 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 HLA-DOAP06340 250 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 COL6A1P12109 1028 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 PLCG2P16885 1265 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 MAPK4P31152 587 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 CYP2C19P33261 490 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 USP5P45974 858 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 SLFNL1Q499Z3 407 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L2Q6R6M4 530 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 NPLOC4Q8TAT6 608 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 SOCS4Q8WXH5 440 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 GPR108Q9NPR9 543 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 CACNA1BQ00975 2339 aa10.56□□□□□ -0.72
SHKBP1-220ENST00000599716 SMIM22K7EJ46 135 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 APBB1O00213 710 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 CYP2D6P10635 497 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 XRCC5P13010 732 aaKnown RBP10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 VCAM1P19320 739 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 CNGA1P29973 690 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 GUCY1A2P33402 732 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 RGS2P41220 211 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 MAP2K5Q13163 448 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 ZKSCAN2Q63HK3 967 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 CLEC10AQ8IUN9 316 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 ITPRIPQ8IWB1 547 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 USP38Q8NB14 1042 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms