RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 TBC1D10CQ8IV04 446 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 PROCA1Q8NCQ7 364 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 CNKSR2Q8WXI2 1034 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 NBPF3Q9H094 633 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 KIAA1683Q9H0B3 1180 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 ARHGEF10LQ9HCE6 1279 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 TCP11L1Q9NUJ3 509 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 NYAP2Q9P242 653 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 THSD7BQ9C0I4 1608 aa19.58■□□□□ 0.72
SHKBP1-219ENST00000599575 IGKV6D-41A0A0C4DH26 115 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 CA12O43570 354 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 RANBP6O60518 1105 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 GUCY1A2P33402 732 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 ICA1Q05084 483 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 TSGA10IPQ3SY00 556 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 TOMM22Q9NS69 142 aa19.57■□□□□ 0.72
SHKBP1-219ENST00000599575 TRIM75PA6NK02 468 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 AOC2O75106 756 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 KRT32Q14532 448 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 CREB3L3Q68CJ9 461 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 IQCA1Q86XH1 822 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 STK11IPQ8N1F8 1099 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 MKL1Q969V6 931 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 TTC14Q96N46 770 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 MTMR4Q9NYA4 1195 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 SLC45A1Q9Y2W3 748 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 TMX2Q9Y320 296 aa19.56■□□□□ 0.72
SHKBP1-219ENST00000599575 CCL15-CCL14A0A0B4J2E2 113 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 SLC27A2O14975 620 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 TTLL1O95922 423 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 NOVP48745 357 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 CCL15Q16663 113 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 USP17L2Q6R6M4 530 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 RALYLQ86SE5 291 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 NCOA7Q8NI08 942 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 LPAR1Q92633 364 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 C12orf42Q96LP6 360 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 MTA3Q9BTC8 594 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 TMOD4Q9NZQ9 345 aa19.55■□□□□ 0.72
SHKBP1-219ENST00000599575 LAMA4Q16363 1823 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 E7EWF7 191 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 MCCP23508 829 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 HSPA4P34932 840 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 MKRN3Q13064 507 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 PABPC4Q13310 644 aaKnown RBP eCLIP19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 RRP12Q5JTH9 1297 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 ANKRD23Q86SG2 305 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 KCNB2Q92953 911 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 FEZ1Q99689 392 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 BEGAINQ9BUH8 593 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 SAGE1Q9NXZ1 904 aa19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.54■□□□□ 0.72
SHKBP1-219ENST00000599575 MTMR2Q13614 643 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 SHROOM1Q2M3G4 852 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 FAM47AQ5JRC9 791 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 DGKHQ86XP1 1220 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 IFNL1Q8IU54 200 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 BRI3BPQ8WY22 251 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 CEP95Q96GE4 821 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 CFHR5Q9BXR6 569 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 USP26Q9BXU7 913 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 TACC3Q9Y6A5 838 aa19.53■□□□□ 0.72
SHKBP1-219ENST00000599575 NEDD4P46934 1319 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 KDM4AO75164 1064 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 HMGB1P09429 215 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 EEF2P13639 858 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 SIAH1Q8IUQ4 282 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 GOPCQ9HD26 462 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 INCENPQ9NQS7 918 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 AGTPBP1Q9UPW5 1226 aa19.52■□□□□ 0.72
SHKBP1-219ENST00000599575 HMGCS2P54868 508 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 MOGSQ13724 837 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 SART3Q15020 963 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 CCDC84Q86UT8 332 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 ACER1Q8TDN7 264 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 ANKS1AQ92625 1134 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 ZIC5Q96T25 663 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 VCPKMTQ9H867 229 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 IL17RBQ9NRM6 502 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 WBP1LQ9NX94 342 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 ZSWIM5Q9P217 1185 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 PNMA3Q9UL41 463 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 ATAD5Q96QE3 1844 aa19.51■□□□□ 0.71
SHKBP1-219ENST00000599575 A0A1W2PRG0 241 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 B4E1Z4 1266 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 HOXA7P31268 230 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 GMCL1P1Q8NEA9 526 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 PTPN18Q99952 460 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 UBAC1Q9BSL1 405 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 CLIP2Q9UDT6 1046 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 STX8Q9UNK0 236 aa19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 GREB1LQ9C091 1923 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-219ENST00000599575 MYH8P13535 1937 aa19.49■□□□□ 0.71
SHKBP1-219ENST00000599575 BTBD19C9JJ37 291 aa19.49■□□□□ 0.71
SHKBP1-219ENST00000599575 IGF2BP3O00425 579 aaKnown RBP eCLIP19.49■□□□□ 0.71
SHKBP1-219ENST00000599575 TOP1P11387 765 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-219ENST00000599575 MCM5P33992 734 aa19.49■□□□□ 0.71
SHKBP1-219ENST00000599575 C8orf34Q49A92 452 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms